Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL241_RS06515 Genome accession   NZ_LR134483
Coordinates   1338629..1339672 (+) Length   347 a.a.
NCBI ID   WP_003755952.1    Uniprot ID   A0A829RBQ2
Organism   Listeria grayi strain NCTC 10812     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1333629..1344672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL241_RS06495 (NCTC10812_01335) ymfI 1334683..1335414 (+) 732 WP_036104183.1 elongation factor P 5-aminopentanone reductase -
  EL241_RS06500 (NCTC10812_01336) - 1335449..1336384 (+) 936 WP_126320436.1 RodZ family helix-turn-helix domain-containing protein -
  EL241_RS06505 (NCTC10812_01337) pgsA 1336463..1337041 (+) 579 WP_036104180.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL241_RS06510 (NCTC10812_01338) cinA 1337169..1338410 (+) 1242 WP_036104177.1 competence/damage-inducible protein A Machinery gene
  EL241_RS06515 (NCTC10812_01339) recA 1338629..1339672 (+) 1044 WP_003755952.1 recombinase RecA Machinery gene
  EL241_RS06520 (NCTC10812_01340) rny 1339952..1341520 (+) 1569 WP_003755951.1 ribonuclease Y -
  EL241_RS06525 (NCTC10812_01341) - 1341612..1342115 (+) 504 WP_036104175.1 GNAT family N-acetyltransferase -
  EL241_RS06530 (NCTC10812_01342) - 1342159..1342962 (+) 804 WP_003755948.1 TIGR00282 family metallophosphoesterase -
  EL241_RS06535 (NCTC10812_01343) - 1342979..1343332 (+) 354 WP_036104171.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37645.64 Da        Isoelectric Point: 4.7344

>NTDB_id=1123098 EL241_RS06515 WP_003755952.1 1338629..1339672(+) (recA) [Listeria grayi strain NCTC 10812]
MTDRQVALDQALKQIEKQFGKGSIMKLGEHSDQNVSTVSSGSLAIDVALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQTQGGTAAFIDAEHALDPTYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGTEVIGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGELLDMASEVDVVNKSGSWYSYNEERIGQGRENAKQFLKEHAELLDEISKK
VRREYDIDGTAVVPAEETEETLDLLDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1123098 EL241_RS06515 WP_003755952.1 1338629..1339672(+) (recA) [Listeria grayi strain NCTC 10812]
GTGACTGATCGTCAAGTAGCTTTAGACCAAGCGTTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCCATTATGAAATT
AGGAGAACACTCTGATCAAAACGTTTCCACCGTATCCAGTGGTTCTTTGGCAATAGATGTTGCATTAGGTGTCGGCGGTT
ATCCGCGCGGACGTATTATTGAAATTTATGGTCCTGAAAGTTCCGGTAAAACAACTGTTGCGCTTCATGCGATCGCAGAA
GTACAAACTCAAGGCGGTACCGCTGCATTTATCGATGCAGAGCATGCGCTTGATCCTACTTATGCCAAAAATTTGGGTGT
CAATATCGACGAATTACTTTTATCACAACCAGATACGGGCGAACAAGCGCTTGAAATCGCAGAAGCCTTAGTCCGTAGTG
GTGCGGTAGATATTTTAGTCATTGACTCTGTTGCAGCATTAGTTCCCCGCGCTGAAATCGAAGGCGAAATGGGCGATGCT
CACGTTGGTTTACAAGCACGGTTAATGTCTCAAGCATTGCGAAAACTTTCTGGTGCTATTAATAAAAGTAAAACGATCGC
TGTCTTCATCAACCAAATTCGAGAAAAAGTCGGCGTTATGTTCGGTAACCCGGAAACTACTCCAGGGGGACGTGCGCTTA
AATTCTACTCAACGGTTCGATTAGAAGTGCGCCGTGCAGAACAATTGAAACAAGGCACAGAAGTTATTGGCAACAAAACA
AAAGTCAAAGTCGTAAAAAATAAAGTAGCTCCTCCATTCCGCGTGGCAGAAGTGGATATCATGTATGGAGAAGGAATTTC
TCGCGAAGGCGAACTATTAGACATGGCTTCCGAAGTGGATGTCGTGAATAAGAGTGGCTCTTGGTATTCTTATAACGAAG
AAAGAATCGGCCAAGGTCGTGAAAATGCGAAACAATTCCTGAAAGAACATGCGGAATTGCTGGACGAGATCTCTAAAAAA
GTAAGACGAGAATACGATATCGATGGTACAGCTGTAGTTCCTGCTGAAGAAACAGAGGAAACTCTCGATTTATTAGATGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829RBQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.982

95.965

0.787
  recA Latilactobacillus sakei subsp. sakei 23K

78.006

98.271

0.767
  recA Streptococcus mitis SK321

65.651

100

0.683
  recA Streptococcus mitis NCTC 12261

65.374

100

0.68
  recA Streptococcus pneumoniae R6

67.341

99.712

0.671
  recA Streptococcus pneumoniae Rx1

67.341

99.712

0.671
  recA Streptococcus pneumoniae D39

67.341

99.712

0.671
  recA Streptococcus pneumoniae TIGR4

67.341

99.712

0.671
  recA Streptococcus pyogenes NZ131

70.336

94.236

0.663
  recA Streptococcus mutans UA159

69.419

94.236

0.654
  recA Lactococcus lactis subsp. cremoris KW2

69.753

93.372

0.651
  recA Ralstonia pseudosolanacearum GMI1000

68.196

94.236

0.643
  recA Glaesserella parasuis strain SC1401

62.651

95.677

0.599
  recA Acinetobacter baylyi ADP1

60

99.424

0.597
  recA Acinetobacter baumannii D1279779

60

99.424

0.597
  recA Neisseria gonorrhoeae strain FA1090

66.452

89.337

0.594
  recA Neisseria gonorrhoeae MS11

66.452

89.337

0.594
  recA Neisseria gonorrhoeae MS11

66.452

89.337

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.805

94.524

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.062

92.219

0.591
  recA Vibrio cholerae strain A1552

64.062

92.219

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

94.524

0.573
  recA Pseudomonas stutzeri DSM 10701

62.187

92.219

0.573
  recA Helicobacter pylori strain NCTC11637

61.682

92.507

0.571
  recA Helicobacter pylori 26695

61.682

92.507

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.219

0.565

Multiple sequence alignment