Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EL241_RS06510 Genome accession   NZ_LR134483
Coordinates   1337169..1338410 (+) Length   413 a.a.
NCBI ID   WP_036104177.1    Uniprot ID   A0A829R8T1
Organism   Listeria grayi strain NCTC 10812     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1332169..1343410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL241_RS06490 (NCTC10812_01334) yfmH 1333233..1334522 (+) 1290 WP_003755963.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EL241_RS06495 (NCTC10812_01335) ymfI 1334683..1335414 (+) 732 WP_036104183.1 elongation factor P 5-aminopentanone reductase -
  EL241_RS06500 (NCTC10812_01336) - 1335449..1336384 (+) 936 WP_126320436.1 RodZ family helix-turn-helix domain-containing protein -
  EL241_RS06505 (NCTC10812_01337) pgsA 1336463..1337041 (+) 579 WP_036104180.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL241_RS06510 (NCTC10812_01338) cinA 1337169..1338410 (+) 1242 WP_036104177.1 competence/damage-inducible protein A Machinery gene
  EL241_RS06515 (NCTC10812_01339) recA 1338629..1339672 (+) 1044 WP_003755952.1 recombinase RecA Machinery gene
  EL241_RS06520 (NCTC10812_01340) rny 1339952..1341520 (+) 1569 WP_003755951.1 ribonuclease Y -
  EL241_RS06525 (NCTC10812_01341) - 1341612..1342115 (+) 504 WP_036104175.1 GNAT family N-acetyltransferase -
  EL241_RS06530 (NCTC10812_01342) - 1342159..1342962 (+) 804 WP_003755948.1 TIGR00282 family metallophosphoesterase -
  EL241_RS06535 (NCTC10812_01343) - 1342979..1343332 (+) 354 WP_036104171.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45185.50 Da        Isoelectric Point: 6.3536

>NTDB_id=1123097 EL241_RS06510 WP_036104177.1 1337169..1338410(+) (cinA) [Listeria grayi strain NCTC 10812]
MTRTEIIAVGTEILMGQIVNSNAAFISEILANQGIYVYHHTAVGDNPGRLTEVIKNAEDRSDLIILTGGLGPTEDDLTKQ
TLAKHLGKKLVVDEAHMQKIVHYYEAQNKVMTENNKLQAMVIEGATVLKNEFGFAAGMYLETKTHRYVLLPGPPSEMKPM
FQNQAIPLLAKAEGNSHLQSKILRFFGIGESKLADDLKDLIHQQTNPTLATYAGENEVVIRITATGETKEEAAEKIAGLE
AEILRRDGEFLYGYGDKSLAEVVISKLLEKNITISAAESLTAGLFQSSLGEKTGISQIFPGGVVTYSSEAKQKLLGVSAD
TINKYGVVSKACAREMAMQVKKQFDTEIGISFTGVAGPDSLEGQKAGSVWIGLSTPDGKTDAFFYQFGRDRNHNRHRAVK
QGFQLIKNYLDQQ

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1123097 EL241_RS06510 WP_036104177.1 1337169..1338410(+) (cinA) [Listeria grayi strain NCTC 10812]
ATGACACGAACAGAAATCATAGCAGTAGGAACAGAAATTTTAATGGGACAGATCGTCAATTCTAACGCGGCATTTATCTC
TGAAATATTAGCCAATCAAGGCATTTATGTCTATCACCATACTGCCGTCGGTGATAATCCGGGTAGACTGACAGAGGTCA
TTAAAAATGCCGAAGACCGCAGTGATCTCATCATCTTAACGGGCGGATTAGGACCAACAGAAGATGATTTGACCAAACAA
ACTTTAGCCAAACATTTAGGAAAAAAACTAGTTGTGGATGAAGCACATATGCAAAAAATCGTCCACTATTATGAAGCGCA
AAATAAGGTCATGACCGAAAATAATAAACTGCAAGCAATGGTGATCGAAGGAGCAACCGTGCTTAAAAATGAATTCGGTT
TTGCAGCAGGGATGTATTTGGAAACGAAAACACACCGCTATGTATTGCTGCCAGGTCCACCTTCTGAAATGAAGCCGATG
TTTCAAAATCAAGCGATTCCGCTTTTGGCGAAAGCAGAGGGGAACAGTCATCTGCAATCCAAGATCCTACGCTTTTTCGG
AATCGGTGAATCAAAACTTGCTGATGATTTGAAAGATCTGATCCATCAACAAACCAACCCGACTTTAGCCACTTATGCAG
GGGAAAACGAAGTGGTGATCCGCATAACCGCCACGGGTGAAACAAAAGAAGAAGCAGCAGAAAAAATTGCTGGACTTGAA
GCTGAGATTTTGAGACGCGATGGGGAATTTTTATATGGTTATGGCGATAAATCACTTGCCGAAGTGGTGATTTCCAAGCT
GTTAGAAAAAAATATCACGATCTCTGCTGCAGAAAGCCTGACTGCTGGATTATTTCAATCTTCATTAGGCGAAAAAACAG
GGATCTCGCAAATTTTCCCAGGTGGAGTCGTTACTTATAGCTCAGAAGCTAAACAAAAACTATTAGGGGTTTCCGCTGAT
ACGATCAACAAGTATGGTGTGGTCAGCAAAGCGTGTGCTAGAGAAATGGCAATGCAGGTGAAAAAACAGTTTGATACAGA
GATCGGTATCAGTTTTACCGGAGTAGCCGGACCGGACTCGCTAGAAGGTCAAAAAGCCGGATCTGTGTGGATCGGACTCA
GCACTCCAGATGGCAAAACCGATGCATTCTTCTATCAATTTGGTCGCGATCGCAACCATAATCGCCACCGCGCGGTCAAA
CAAGGATTTCAACTGATAAAAAACTATTTAGACCAACAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-170)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829R8T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.971

99.758

0.508
  cinA Streptococcus mitis SK321

50.12

100

0.506
  cinA Streptococcus pneumoniae TIGR4

49.403

100

0.501
  cinA Streptococcus pneumoniae Rx1

49.165

100

0.499
  cinA Streptococcus pneumoniae R6

49.165

100

0.499
  cinA Streptococcus mitis NCTC 12261

49.4

100

0.499
  cinA Streptococcus pneumoniae D39

48.926

100

0.496
  cinA Streptococcus mutans UA159

48.786

99.758

0.487
  cinA Streptococcus suis isolate S10

39.806

99.758

0.397

Multiple sequence alignment