Detailed information NTG1123034

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: EL215_RS03000
• Genome accession: NZ_LR134481
• Coordinates: 607188..608243 (-)
• Length: 351 a.a.
• NCBI ID: WP_126470116.1
• Uniprot ID: A0A3S4VHX3
• Organism: Haemophilus parainfluenzae strain NCTC10665
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	595563..618534	607188..608243	within	0

Gene organization within MGE regions

Location: 595563..618534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL215_RS02940 (NCTC10665_00580)	gyrB	596380..598806 (+)	2427	WP_126470102.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
EL215_RS02945 (NCTC10665_00581)	-	599058..600803 (+)	1746	WP_126470104.1	ABC transporter ATP-binding protein/permease	-
EL215_RS02950 (NCTC10665_00582)	cydC	600796..602454 (+)	1659	WP_126470106.1	thiol reductant ABC exporter subunit CydC	-
EL215_RS02955 (NCTC10665_00583)	coaA	602499..603434 (-)	936	WP_126470108.1	type I pantothenate kinase	-
EL215_RS02980 (NCTC10665_00588)	tuf	604136..605320 (+)	1185	WP_005635637.1	elongation factor Tu	-
EL215_RS02985 (NCTC10665_00589)	-	605477..606295 (+)	819	WP_126470110.1	Cof-type HAD-IIB family hydrolase	-
EL215_RS02990 (NCTC10665_00590)	crcB	606296..606691 (+)	396	WP_126470112.1	fluoride efflux transporter CrcB	-
EL215_RS02995 (NCTC10665_00591)	recX	606666..607118 (-)	453	WP_126470114.1	recombination regulator RecX	-
EL215_RS03000 (NCTC10665_00592)	recA	607188..608243 (-)	1056	WP_126470116.1	recombinase RecA	Machinery gene
EL215_RS03005 (NCTC10665_00593)	sxy/tfoX	608673..609341 (+)	669	WP_126470118.1	TfoX/Sxy family DNA transformation protein	Regulator
EL215_RS03030 (NCTC10665_00598)	def	614856..615365 (+)	510	WP_126470120.1	peptide deformylase	-
EL215_RS03035 (NCTC10665_00599)	fmt	615425..616381 (+)	957	WP_126470122.1	methionyl-tRNA formyltransferase	-
EL215_RS03040 (NCTC10665_00600)	rsmB	616381..617718 (+)	1338	WP_126470124.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
EL215_RS03045 (NCTC10665_00601)	-	617719..618534 (+)	816	WP_126470126.1	glycosyltransferase family A protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 37584.05 Da
• Isoelectric Point: 4.9529

>NTDB_id=1123034 EL215_RS03000 WP_126470116.1 607188..608243(-) (recA) [Haemophilus parainfluenzae strain NCTC10665]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEIIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLHENPAKSDEL
EAKLRAELVANPEQALMADIEQSNDDAESDF

Nucleotide

• Length: 1056 bp

>NTDB_id=1123034 EL215_RS03000 WP_126470116.1 607188..608243(-) (recA) [Haemophilus parainfluenzae strain NCTC10665]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCGCTCGCCGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCAAT
TATGAAATTGGGCGATACTCAAGCCCTTGATGTAGAATCTGTTTCAACTGGTTCTTTAGGTCTTGATGTAGCTCTTGGTA
TTGGTGGTTTACCAATGGGTCGTATTGTTGAAATTTTTGGACCTGAATCTTCTGGTAAAACAACCTTAACTTTATCTGTT
ATCGCTCAAGCACAGAAAGTAGGTAAAACCTGTGCATTTATAGATGCGGAGCATGCACTTGATCCTATTTATGCAGCAAA
ACTTGGTGTTGATGTTAAAGAGCTCTTAGTCTCCCAACCAGACAACGGTGAACAAGCACTTGAAATTTGTGATGCCTTAG
TGCGCTCTGGAGCGGTAGATGTGGTCATTGTGGACTCTGTTGCTGCACTTACCCCAAAAGCTGAAATCGAAGGTGAAATG
GGTGATTCACACATGGGTTTACAAGCGCGTTTGATGTCTCAAGCACTACGTAAATTAACCGGTCAGATCAAAAATGCAAA
CTGTCTCGTTATCTTCATTAACCAAATTCGTATGAAAATAGGTGTCATGTTTGGTAACCCAGAAACCACAACTGGTGGTA
ACGCGCTAAAATTCTACTCTTCTGTTCGTTTAGATATCCGTCGTACTGGTTCAGTTAAAGATGGAGATGAGATCATTGGT
AACGAAACTCGTGTTAAAGTAGTTAAAAACAAATTAGCCGCACCTTTCCGCCAAGTAGATTTCCAAATTCTTTATGGAGA
AGGTATTTCTAAAGCAGGCGAATTGATTGAACTCGGCGTTAAACACAAACTTGTTGAGAAATCTGGTGCGTGGTATGCAT
ATAACGGTGAAAAAATTGGTCAAGGTAAAGCTAATGCAATGAAATGGTTACATGAAAATCCTGCTAAATCAGACGAACTT
GAAGCGAAGCTTCGTGCTGAATTAGTCGCTAACCCAGAACAAGCATTAATGGCTGATATTGAACAATCTAATGATGACGC
AGAAAGCGATTTCTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

3D structure

• AlphaFold DB: A0A3S4VHX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Glaesserella parasuis strain SC1401	76.744	98.006	0.752
recA	Vibrio cholerae strain A1552	76.232	98.291	0.749
recA	Vibrio cholerae O1 biovar El Tor strain E7946	76.232	98.291	0.749
recA	Pseudomonas stutzeri DSM 10701	77.538	92.593	0.718
recA	Acinetobacter baylyi ADP1	70.317	98.86	0.695
recA	Neisseria gonorrhoeae MS11	74.613	92.023	0.687
recA	Neisseria gonorrhoeae MS11	74.613	92.023	0.687
recA	Neisseria gonorrhoeae strain FA1090	74.613	92.023	0.687
recA	Acinetobacter baumannii D1279779	71.472	92.877	0.664
recA	Ralstonia pseudosolanacearum GMI1000	72.727	90.883	0.661
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	62.687	95.442	0.598
recA	Helicobacter pylori 26695	61.471	96.866	0.595
recA	Helicobacter pylori strain NCTC11637	60.882	96.866	0.59
recA	Bacillus subtilis subsp. subtilis str. 168	65.909	87.749	0.578
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.722	90.313	0.575
recA	Streptococcus pneumoniae TIGR4	56.857	99.715	0.567
recA	Streptococcus pneumoniae Rx1	56.857	99.715	0.567
recA	Streptococcus pneumoniae D39	56.857	99.715	0.567
recA	Streptococcus pneumoniae R6	56.857	99.715	0.567
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.55	93.162	0.564
recA	Streptococcus mutans UA159	59.633	93.162	0.556
recA	Latilactobacillus sakei subsp. sakei 23K	60.062	92.023	0.553
recA	Streptococcus mitis NCTC 12261	59.327	93.162	0.553
recA	Streptococcus mitis SK321	59.021	93.162	0.55
recA	Streptococcus pyogenes NZ131	58.537	93.447	0.547
recA	Lactococcus lactis subsp. cremoris KW2	58.462	92.593	0.541