Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL212_RS07320 Genome accession   NZ_LR134394
Coordinates   1495645..1496691 (+) Length   348 a.a.
NCBI ID   WP_003719674.1    Uniprot ID   Q83TH2
Organism   Listeria ivanovii subsp. londoniensis strain NCTC12701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1490645..1501691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL212_RS07300 (NCTC12701_01486) ymfI 1491662..1492393 (+) 732 WP_003719670.1 elongation factor P 5-aminopentanone reductase -
  EL212_RS07305 (NCTC12701_01487) - 1492443..1493393 (+) 951 WP_038408213.1 helix-turn-helix domain-containing protein -
  EL212_RS07310 (NCTC12701_01488) pgsA 1493480..1494058 (+) 579 WP_038407267.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL212_RS07315 (NCTC12701_01489) cinA 1494126..1495388 (+) 1263 WP_038408861.1 competence/damage-inducible protein A Machinery gene
  EL212_RS07320 (NCTC12701_01490) recA 1495645..1496691 (+) 1047 WP_003719674.1 recombinase RecA Machinery gene
  EL212_RS07325 (NCTC12701_01491) rny 1496992..1498554 (+) 1563 WP_012985597.1 ribonuclease Y -
  EL212_RS07330 (NCTC12701_01492) - 1498668..1499165 (+) 498 WP_003719679.1 GNAT family N-acetyltransferase -
  EL212_RS07335 (NCTC12701_01493) - 1499170..1499973 (+) 804 WP_038408863.1 TIGR00282 family metallophosphoesterase -
  EL212_RS07340 (NCTC12701_01494) - 1499990..1500352 (+) 363 WP_038407269.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37921.97 Da        Isoelectric Point: 4.8011

>NTDB_id=1122687 EL212_RS07320 WP_003719674.1 1495645..1496691(+) (recA) [Listeria ivanovii subsp. londoniensis strain NCTC12701]
MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT
KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR
VREEYEIDGSNKEPLAETEETLSLLDDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1122687 EL212_RS07320 WP_003719674.1 1495645..1496691(+) (recA) [Listeria ivanovii subsp. londoniensis strain NCTC12701]
GTGAATGATCGTCAAGCGGCATTAGACCAAGCTTTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCCATTATGAAATT
AGGGGAGCATTCAGACCAAAATATATCTACTATTTCTAGTGGTTCATTAGCATTAGATATTGCTTTAGGAGTCGGCGGAT
ATCCAAGAGGGCGTATTATTGAAGTATACGGACCCGAAAGTTCTGGTAAGACAACTGTTGCACTACACGCTATTGCAGAA
GTACAAGCTCAAGGTGGGACAGCGGCATTTATTGATGCAGAACATGCACTCGATCCTGCATATGCCAAAAATCTGGGTGT
TAATATTGATGAGTTACTTTTATCTCAACCAGATACAGGAGAACAAGCATTAGAAATTGCTGAAGCACTAGTAAGAAGTG
GCGCGGTTGATATGCTAGTTATTGACTCTGTAGCAGCACTTGTACCACGAGCAGAAATCGAAGGCGAAATGGGTGATGCA
CATGTTGGTTTGCAAGCACGATTAATGTCACAAGCTTTACGTAAACTTTCTGGAGCTATCAATAAATCTAAAACTATCGC
GATTTTCATCAATCAAATTCGTGAAAAAGTGGGTGTTATGTTCGGTAATCCAGAAATCACACCTGGTGGCCGGGCGCTTA
AATTCTATTCTACTGTTCGTTTAGAAGTAAGACGTGCAGAGCAGTTGAAACAAGGTACCGACGTAATGGGTAACAAAACA
AAAATTAAAGTAGTAAAAAATAAAGTAGCTCCACCATTTCGTATCGCGGAAGTAGATATTATGTACGGAGAAGGTATCTC
ACGTGAAGGCGAACTTGTTGATATGGCCGCAGAAGTAGATGTTATCAATAAGAGTGGTTCATGGTATTCTTATAAAGAAG
AACGTATCGGTCAAGGTCGTGAAAATGCTAAACAATATTTAAAAGAGCATACTGATATTCGGGACGAAATCTCCAAGCGT
GTTCGTGAAGAATATGAAATAGATGGCAGCAATAAAGAACCATTAGCAGAAACAGAAGAAACATTAAGCTTACTTGATGA
CGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83TH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.451

94.253

0.796
  recA Latilactobacillus sakei subsp. sakei 23K

77.299

100

0.773
  recA Streptococcus mitis SK321

66.111

100

0.684
  recA Streptococcus mitis NCTC 12261

68.513

98.563

0.675
  recA Streptococcus pneumoniae D39

70.783

95.402

0.675
  recA Streptococcus pneumoniae R6

70.783

95.402

0.675
  recA Streptococcus pneumoniae TIGR4

70.783

95.402

0.675
  recA Streptococcus pneumoniae Rx1

70.783

95.402

0.675
  recA Streptococcus pyogenes NZ131

69.817

94.253

0.658
  recA Streptococcus mutans UA159

68.902

94.253

0.649
  recA Lactococcus lactis subsp. cremoris KW2

68.502

93.966

0.644
  recA Vibrio cholerae strain A1552

62.202

96.552

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.202

96.552

0.601
  recA Ralstonia pseudosolanacearum GMI1000

63.804

93.678

0.598
  recA Neisseria gonorrhoeae strain FA1090

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Acinetobacter baylyi ADP1

59.249

99.425

0.589
  recA Acinetobacter baumannii D1279779

59.767

98.563

0.589
  recA Pseudomonas stutzeri DSM 10701

60.831

96.839

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.006

94.54

0.586
  recA Helicobacter pylori strain NCTC11637

59.531

97.989

0.583
  recA Helicobacter pylori 26695

59.531

97.989

0.583
  recA Glaesserella parasuis strain SC1401

63.009

91.667

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

91.954

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

95.115

0.56

Multiple sequence alignment