Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EL212_RS07315 Genome accession   NZ_LR134394
Coordinates   1494126..1495388 (+) Length   420 a.a.
NCBI ID   WP_038408861.1    Uniprot ID   A0AAX2DNJ4
Organism   Listeria ivanovii subsp. londoniensis strain NCTC12701     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1489126..1500388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL212_RS07295 (NCTC12701_01485) yfmH 1490282..1491565 (+) 1284 WP_003719669.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EL212_RS07300 (NCTC12701_01486) ymfI 1491662..1492393 (+) 732 WP_003719670.1 elongation factor P 5-aminopentanone reductase -
  EL212_RS07305 (NCTC12701_01487) - 1492443..1493393 (+) 951 WP_038408213.1 helix-turn-helix domain-containing protein -
  EL212_RS07310 (NCTC12701_01488) pgsA 1493480..1494058 (+) 579 WP_038407267.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL212_RS07315 (NCTC12701_01489) cinA 1494126..1495388 (+) 1263 WP_038408861.1 competence/damage-inducible protein A Machinery gene
  EL212_RS07320 (NCTC12701_01490) recA 1495645..1496691 (+) 1047 WP_003719674.1 recombinase RecA Machinery gene
  EL212_RS07325 (NCTC12701_01491) rny 1496992..1498554 (+) 1563 WP_012985597.1 ribonuclease Y -
  EL212_RS07330 (NCTC12701_01492) - 1498668..1499165 (+) 498 WP_003719679.1 GNAT family N-acetyltransferase -
  EL212_RS07335 (NCTC12701_01493) - 1499170..1499973 (+) 804 WP_038408863.1 TIGR00282 family metallophosphoesterase -
  EL212_RS07340 (NCTC12701_01494) - 1499990..1500352 (+) 363 WP_038407269.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46040.47 Da        Isoelectric Point: 5.0575

>NTDB_id=1122686 EL212_RS07315 WP_038408861.1 1494126..1495388(+) (cinA) [Listeria ivanovii subsp. londoniensis strain NCTC12701]
MANAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPARLKEVIKIAENRSDILILTGGLGPTEDDITKQ
ILAEHLQKNLIIDPFHMNKITEYFASRSRTMTENNKLQAVIIEGAIVLNNDYGFAAGMFLQQNNHTYILLPGPPSEMKPM
FSHYANPLLVKDNGAENILESKIMRFFGIGESQLAADLNDLIVTQENPTIATYAGDNEVIVRITATAKTKEEAANLVNET
EQEILQRDGAFLYGYGEVTLPELVTAMLLEKNITISAAESLTAGLFQAEIARFPGISKIFKGGMVTYSAEAKQSILQVSK
QVIADKGVVSSECATEMADNVRRLCNTDLGISFTGVAGPDSLEGHPAGTIWIGLSIKGYKTEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNASFSFK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1122686 EL212_RS07315 WP_038408861.1 1494126..1495388(+) (cinA) [Listeria ivanovii subsp. londoniensis strain NCTC12701]
ATGGCAAATGCAGAAATTATTGCAGTAGGAACAGAATTATTATTAGGACAAATCGTTAATTCGAACGCCGCTTTTATTTC
ACAAGAATTAGCAGCGGACGGAATTTATGTCTATCATCATACAGTTGTTGGAGATAACCCAGCGCGTCTAAAAGAAGTGA
TTAAAATTGCTGAAAACCGCAGTGATATTTTAATTTTAACAGGTGGACTTGGACCAACTGAAGATGATATTACGAAACAA
ATTTTAGCTGAACATTTGCAGAAAAATTTAATAATCGATCCATTTCATATGAATAAAATTACCGAATATTTTGCTTCAAG
AAGTCGTACGATGACTGAAAACAACAAATTACAAGCAGTTATTATTGAAGGGGCGATTGTTTTAAATAATGATTATGGCT
TTGCTGCAGGGATGTTTTTACAGCAAAATAACCATACATACATTTTATTACCTGGACCTCCTTCTGAAATGAAACCAATG
TTTAGTCATTACGCAAACCCTTTGCTTGTAAAAGATAATGGAGCGGAAAATATTTTAGAATCTAAAATTATGCGTTTTTT
TGGTATTGGTGAATCTCAACTAGCTGCGGATTTAAATGATCTGATTGTAACACAAGAGAATCCTACTATCGCTACTTATG
CTGGGGATAATGAAGTGATTGTGCGTATTACGGCAACAGCCAAAACAAAGGAAGAAGCAGCGAATCTAGTCAATGAAACC
GAACAAGAAATTCTTCAACGTGATGGCGCTTTTTTATATGGATACGGGGAAGTTACTTTGCCAGAATTAGTAACGGCGAT
GTTGCTAGAGAAAAACATTACCATATCAGCTGCTGAAAGTTTAACGGCCGGTCTTTTTCAAGCTGAAATTGCTCGTTTCC
CTGGAATTTCGAAAATTTTCAAAGGGGGAATGGTTACTTACAGTGCAGAAGCAAAACAATCTATTTTACAAGTTTCCAAA
CAAGTAATTGCAGATAAAGGTGTGGTTAGTTCGGAATGTGCTACTGAGATGGCAGATAATGTGAGACGGCTTTGCAATAC
CGATTTGGGTATTAGTTTCACAGGTGTTGCAGGACCAGACAGTTTAGAAGGCCATCCAGCAGGAACTATTTGGATTGGCT
TAAGCATCAAAGGGTACAAAACAGAAGCCTATCAATTTGTTTATGGTCGAGATAGGAATCATAATCGTCGCCGAGCTGTA
AAACAAGGATTTCAACTAATTAAGCAATTTTTAGATACCAATGCTTCATTTTCTTTTAAGTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

48.694

100

0.488
  cinA Bacillus subtilis subsp. subtilis str. 168

50

97.619

0.488
  cinA Streptococcus mitis NCTC 12261

48.926

99.762

0.488
  cinA Streptococcus mitis SK321

48.926

99.762

0.488
  cinA Streptococcus pneumoniae Rx1

48.456

100

0.486
  cinA Streptococcus pneumoniae R6

48.456

100

0.486
  cinA Streptococcus pneumoniae D39

48.219

100

0.483
  cinA Streptococcus mutans UA159

48.91

98.333

0.481
  cinA Streptococcus suis isolate S10

39.952

98.333

0.393

Multiple sequence alignment