Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL147_RS06355 Genome accession   NZ_LR134341
Coordinates   1298770..1299912 (+) Length   380 a.a.
NCBI ID   WP_007893872.1    Uniprot ID   G5K7I5
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1293770..1304912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS06335 (NCTC13786_01267) - 1294926..1296149 (+) 1224 WP_007893804.1 MFS transporter -
  EL147_RS06340 (NCTC13786_01268) ruvA 1296151..1296744 (+) 594 WP_007893783.1 Holliday junction branch migration protein RuvA -
  EL147_RS06345 (NCTC13786_01269) - 1296751..1297305 (+) 555 WP_007893754.1 DNA-3-methyladenine glycosylase I -
  EL147_RS06350 (NCTC13786_01270) cinA 1297421..1298680 (+) 1260 WP_007893844.1 competence/damage-inducible protein A Machinery gene
  EL147_RS06355 (NCTC13786_01271) recA 1298770..1299912 (+) 1143 WP_007893872.1 recombinase RecA Machinery gene
  EL147_RS06360 (NCTC13786_01272) spx 1300318..1300716 (+) 399 WP_007893913.1 transcriptional regulator Spx -
  EL147_RS06365 (NCTC13786_01273) - 1300828..1301097 (+) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  EL147_RS06370 (NCTC13786_01274) ruvX 1301094..1301513 (+) 420 WP_007893744.1 Holliday junction resolvase RuvX -
  EL147_RS06375 (NCTC13786_01275) - 1301524..1301823 (+) 300 WP_007893854.1 DUF1292 domain-containing protein -
  EL147_RS06380 (NCTC13786_01276) - 1301951..1303513 (+) 1563 WP_007893784.1 hypothetical protein -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40999.64 Da        Isoelectric Point: 4.7453

>NTDB_id=1122014 EL147_RS06355 WP_007893872.1 1298770..1299912(+) (recA) [Streptococcus pseudoporcinus strain NCTC13786]
MAKKVKKTEEITKKFGDDRRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKKFLADHPDIFEEIDHKVRVKVGLLEDDLEQEEVVEPTLDQSTDELVLELDDAIEIED

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1122014 EL147_RS06355 WP_007893872.1 1298770..1299912(+) (recA) [Streptococcus pseudoporcinus strain NCTC13786]
TTGGCAAAAAAAGTGAAGAAAACAGAAGAAATCACCAAAAAGTTTGGCGATGATCGTCGTAAAGCGTTAGATGATGCTTT
AAAAAATATTGAGAAAGACTTCGGGAAAGGTGCGGTTATGCGTCTCGGAGAAAGAGCTGAACAAAAGGTTCAAGTCATGA
GTTCAGGAAGTCTTGCTCTGGACATTGCTTTAGGTGCTGGAGGTTATCCTAAGGGCCGTATTATCGAAATTTATGGACCT
GAATCATCAGGTAAAACAACTGTTGCTCTCCACGCAGTTGCTCAGGCTCAAAAAGAAGGTGGTATTGCCGCTTTTATTGA
TGCTGAACATGCTCTAGATCCTGCCTATGCCGCTTCTTTAGGTGTTAATATTGATGAGTTGCTCTTGTCGCAGCCGGACT
CAGGCGAGCAAGGACTTGAAATTGCAGGTAAATTAATTGACTCTGGTGCTGTTGATTTGGTGGTAGTAGACTCGGTCGCA
GCTTTAGTGCCACGTGCAGAAATTGACGGTGATATTGGGGATAGTCATGTTGGGTTGCAGGCTCGGATGATGAGTCAAGC
CATGCGTAAGCTTTCAGCCTCTATCAATAAAACTAAAACGATTGCTATTTTTATTAACCAGTTACGTGAAAAAGTGGGGG
TTATGTTTGGGAATCCGGAAACAACACCTGGTGGTCGTGCACTGAAATTCTACTCCTCTGTCCGACTGGATGTTCGTGGT
AATACACAGATTAAAGGTACTGGTGAGCAAAAAGACAGCAACATAGGTAAAGAGACCAAAATCAAAGTTGTTAAAAATAA
AGTTGCTCCTCCATTTAAAGTAGCTGAAGTGGAAATCATGTATGGAGAAGGTATTTCACGTACAGGGGAGTTAATTAAAA
TTGCTTCAGATTTAGACATTATTCAGAAAGCGGGCGCTTGGTTCTCTTATAATGGCGAAAAAATCGGGCAAGGTTCTGAG
AATGCTAAAAAATTCTTGGCAGATCATCCTGATATTTTTGAAGAAATCGATCATAAAGTGCGTGTGAAAGTAGGTCTCTT
AGAAGATGACTTAGAGCAAGAAGAAGTTGTGGAGCCTACATTAGACCAAAGTACTGATGAGCTAGTCCTCGAGTTGGATG
ATGCGATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K7I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.091

100

0.903
  recA Streptococcus pyogenes NZ131

90.263

100

0.903
  recA Streptococcus mitis NCTC 12261

83.896

100

0.85
  recA Streptococcus pneumoniae TIGR4

83.636

100

0.847
  recA Streptococcus pneumoniae Rx1

83.636

100

0.847
  recA Streptococcus pneumoniae D39

83.636

100

0.847
  recA Streptococcus pneumoniae R6

83.636

100

0.847
  recA Streptococcus mitis SK321

84.252

100

0.845
  recA Lactococcus lactis subsp. cremoris KW2

77.586

91.579

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

67.416

93.684

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

69.909

86.579

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.696

90

0.555
  recA Neisseria gonorrhoeae strain FA1090

62.84

87.105

0.547
  recA Neisseria gonorrhoeae MS11

62.84

87.105

0.547
  recA Neisseria gonorrhoeae MS11

62.84

87.105

0.547
  recA Glaesserella parasuis strain SC1401

59.118

89.474

0.529
  recA Acinetobacter baylyi ADP1

61.231

85.526

0.524
  recA Acinetobacter baumannii D1279779

61.231

85.526

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

85.526

0.521
  recA Vibrio cholerae strain A1552

60.923

85.526

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

85

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

87.105

0.516
  recA Helicobacter pylori strain NCTC11637

55.524

92.895

0.516
  recA Helicobacter pylori 26695

55.524

92.895

0.516
  recA Pseudomonas stutzeri DSM 10701

56.069

91.053

0.511
  recA Ralstonia pseudosolanacearum GMI1000

58.991

83.421

0.492

Multiple sequence alignment