Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL268_RS12695 Genome accession   NZ_LR134338
Coordinates   2523855..2524913 (+) Length   352 a.a.
NCBI ID   WP_106653519.1    Uniprot ID   -
Organism   Brevibacillus brevis strain NCTC2611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2518855..2529913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL268_RS12680 (NCTC2611_02595) pgsA 2520163..2520738 (+) 576 WP_017249262.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL268_RS12685 (NCTC2611_02596) cinA 2520846..2522090 (+) 1245 WP_106653517.1 competence/damage-inducible protein A Machinery gene
  EL268_RS12690 (NCTC2611_02597) - 2522099..2523688 (+) 1590 WP_106653518.1 DEAD/DEAH box helicase -
  EL268_RS12695 (NCTC2611_02598) recA 2523855..2524913 (+) 1059 WP_106653519.1 recombinase RecA Machinery gene
  EL268_RS12700 (NCTC2611_02599) - 2524983..2525624 (+) 642 WP_106653520.1 RecX family transcriptional regulator -
  EL268_RS12705 (NCTC2611_02600) rny 2525898..2527439 (+) 1542 WP_007719154.1 ribonuclease Y -
  EL268_RS12710 (NCTC2611_02601) - 2527549..2528343 (+) 795 WP_106653521.1 TIGR00282 family metallophosphoesterase -
  EL268_RS12715 (NCTC2611_02602) spoVS 2528462..2528722 (+) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  EL268_RS12720 (NCTC2611_02603) - 2528831..2529769 (+) 939 WP_106653522.1 dipeptidase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37881.08 Da        Isoelectric Point: 4.8969

>NTDB_id=1121936 EL268_RS12695 WP_106653519.1 2523855..2524913(+) (recA) [Brevibacillus brevis strain NCTC2611]
MSDRRAALESALRQIEKQFGKGSIMKLGEVSNVQISTVSSGALALDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQGRENSKVFLKENPHIASQIETK
VREYFSLNPGSVPETEPVNDPEQDEEPTFDLD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1121936 EL268_RS12695 WP_106653519.1 2523855..2524913(+) (recA) [Brevibacillus brevis strain NCTC2611]
TTGTCAGATCGTCGCGCAGCTTTGGAGAGTGCATTGCGTCAGATAGAAAAGCAATTCGGTAAAGGTTCCATTATGAAATT
GGGGGAAGTATCCAACGTTCAGATTTCTACCGTATCGAGTGGAGCGCTTGCTCTTGATATCGCACTAGGTGTGGGCGGAT
TCCCACGTGGACGGATTATTGAGATTTACGGACCAGAGTCTTCTGGTAAAACAACAGTAGCACTTCATGCGATCGCAGAG
GTGCAAAGACAAGGCGGACAGGCTGCGTTTATCGATGCTGAGCATGCTTTGGATCCGGTTTACGCTGCGAAGCTGGGTGT
GAACATCGACGAATTGCTGTTGTCCCAACCAGACACTGGAGAGCAAGCTTTGGAGATCGCGGAAGCACTGGTTCGTTCTG
GTGCGGTAGATATTATCGTAGTCGACTCCGTTGCGGCACTCGTGCCAAAAGCAGAGATCGAAGGCGAGATGGGAGATTCC
CACGTAGGTTTGCAAGCACGCTTGATGTCCCAAGCACTCCGCAAGCTGTCCGGTGCCATCAACAAGTCCAAAACGATTGC
GATCTTCATCAACCAGCTTCGTGAAAAAGTGGGAGTTATGTTCGGGAACCCGGAAACAACTCCAGGTGGACGCGCTTTGA
AGTTCTACGCGAGTGTTCGTTTGGATGTTCGTAAAGCAGAATCTATCAAAGTCGGCAACGACATTTTGGGTAGCAAGACG
AAGATCAAAGTTGTCAAAAATAAAGTGGCTCCACCATTTAAGGTTGCAGAAGTGGACATCATGTACGGTGAAGGTATTTC
CAGAGAAGGTAGCATCCTCGACATCGGTTCTGAGATTGATGTCGTTCAAAAGAGTGGTGCTTGGTATTCCTTCAACGAAG
AGCGTCTCGGCCAAGGTAGAGAAAATTCGAAGGTCTTCCTGAAGGAAAATCCGCACATTGCATCTCAGATTGAAACAAAG
GTGCGCGAATACTTCAGCCTGAACCCTGGCTCTGTTCCAGAAACTGAGCCGGTAAACGACCCAGAGCAAGATGAAGAGCC
AACATTTGATCTGGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.928

94.318

0.773
  recA Latilactobacillus sakei subsp. sakei 23K

70.76

97.159

0.687
  recA Streptococcus mitis SK321

65.565

100

0.676
  recA Streptococcus pneumoniae Rx1

67.33

100

0.673
  recA Streptococcus pneumoniae D39

67.33

100

0.673
  recA Streptococcus pneumoniae R6

67.33

100

0.673
  recA Streptococcus pneumoniae TIGR4

67.33

100

0.673
  recA Streptococcus pyogenes NZ131

66.949

100

0.673
  recA Streptococcus mitis NCTC 12261

66.572

100

0.668
  recA Streptococcus mutans UA159

65.254

100

0.656
  recA Lactococcus lactis subsp. cremoris KW2

68.485

93.75

0.642
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae strain FA1090

62.717

98.295

0.616
  recA Ralstonia pseudosolanacearum GMI1000

66.361

92.898

0.616
  recA Vibrio cholerae strain A1552

65.443

92.898

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.443

92.898

0.608
  recA Acinetobacter baumannii D1279779

60.571

99.432

0.602
  recA Glaesserella parasuis strain SC1401

64.134

93.466

0.599
  recA Pseudomonas stutzeri DSM 10701

60.35

97.443

0.588
  recA Acinetobacter baylyi ADP1

62.577

92.614

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

91.193

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

92.898

0.577
  recA Helicobacter pylori 26695

58.772

97.159

0.571
  recA Helicobacter pylori strain NCTC11637

58.48

97.159

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

90.909

0.565

Multiple sequence alignment