Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EL268_RS12685 Genome accession   NZ_LR134338
Coordinates   2520846..2522090 (+) Length   414 a.a.
NCBI ID   WP_106653517.1    Uniprot ID   -
Organism   Brevibacillus brevis strain NCTC2611     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2515846..2527090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL268_RS12660 (NCTC2611_02591) - 2516636..2516905 (+) 270 WP_106653514.1 DUF3243 domain-containing protein -
  EL268_RS12665 (NCTC2611_02592) - 2517013..2517792 (+) 780 WP_016743377.1 YmfK family protein -
  EL268_RS12670 (NCTC2611_02593) - 2517805..2518704 (+) 900 WP_106653515.1 helix-turn-helix domain-containing protein -
  EL268_RS12675 (NCTC2611_02594) rimO 2518816..2520162 (+) 1347 WP_106653516.1 30S ribosomal protein S12 methylthiotransferase RimO -
  EL268_RS12680 (NCTC2611_02595) pgsA 2520163..2520738 (+) 576 WP_017249262.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL268_RS12685 (NCTC2611_02596) cinA 2520846..2522090 (+) 1245 WP_106653517.1 competence/damage-inducible protein A Machinery gene
  EL268_RS12690 (NCTC2611_02597) - 2522099..2523688 (+) 1590 WP_106653518.1 DEAD/DEAH box helicase -
  EL268_RS12695 (NCTC2611_02598) recA 2523855..2524913 (+) 1059 WP_106653519.1 recombinase RecA Machinery gene
  EL268_RS12700 (NCTC2611_02599) - 2524983..2525624 (+) 642 WP_106653520.1 RecX family transcriptional regulator -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44879.40 Da        Isoelectric Point: 5.0809

>NTDB_id=1121935 EL268_RS12685 WP_106653517.1 2520846..2522090(+) (cinA) [Brevibacillus brevis strain NCTC2611]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLLQVIRLASGRSDLVIFTGGLGPTQDDLTKET
VAGHVGIGLETNPEAMERIEKFFSQRGIVMTENNRKQALVLSGSHVFSNDFGMAPGMAIRHDSSTFVLLPGPPSELYPMV
ENYVMPYVTDLLPEKQVFHSHLLRFYGIGESALEEQLLDLIEKQDNPTIAPYAKEFEVTLRITARSATVEEGEALILPVE
KEILSRVGQYMYGMGESSSLHDVLVSELKKRNETIACAESCTGGAIASLITSVPGSSQVFRGGVVCYTNEVKNQLLEVPD
SILQTDGAVSEKTAQLLAEHVREKLGATYGISVTGVAGPDPSEGKPVGIVYVGIAAEGMPTVVKELRLAGRRHAIVGRAA
KYALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1121935 EL268_RS12685 WP_106653517.1 2520846..2522090(+) (cinA) [Brevibacillus brevis strain NCTC2611]
ATGAGAGCGGAGATTATCGCGGTAGGTACCGAGCTTTTGTTAGGCCAGATCGCTAACACCAACGCACAGTTTCTTTCTCA
GAAGCTGGCGGAAATTGGCGTGGGAGTATACTTTCATACGGTTGTGGGAGACAACACGGAGCGATTGCTACAAGTGATTC
GATTGGCATCAGGACGATCTGATCTCGTCATTTTCACGGGTGGGTTAGGGCCGACTCAAGATGATTTGACGAAAGAAACC
GTGGCGGGGCATGTAGGCATTGGATTGGAAACGAATCCAGAAGCCATGGAGAGAATTGAGAAATTCTTTTCGCAACGTGG
GATTGTCATGACGGAGAACAATCGTAAGCAGGCGCTGGTGCTTTCTGGCAGCCATGTATTCTCCAACGATTTCGGGATGG
CGCCGGGGATGGCGATCCGTCATGACAGTAGTACGTTCGTGCTGTTGCCTGGACCACCAAGCGAGTTGTATCCAATGGTG
GAGAATTACGTGATGCCTTACGTAACCGATTTGCTCCCCGAAAAACAAGTGTTTCATTCTCATTTACTCCGGTTCTACGG
AATAGGCGAATCCGCTTTGGAGGAACAACTGCTCGATCTGATCGAAAAGCAGGACAATCCAACGATCGCGCCATACGCCA
AAGAATTCGAAGTAACGCTTCGGATTACGGCAAGATCTGCTACAGTCGAAGAAGGGGAAGCCCTGATCTTGCCTGTAGAA
AAAGAAATTCTCAGCCGTGTTGGCCAGTATATGTACGGGATGGGCGAGAGCTCGTCGCTGCATGATGTCCTGGTTTCTGA
GCTGAAAAAGAGAAATGAAACAATTGCTTGTGCAGAAAGCTGCACAGGAGGAGCAATTGCCTCGTTGATTACCTCTGTGC
CGGGAAGCTCGCAAGTGTTTCGTGGCGGGGTAGTCTGCTACACCAATGAAGTGAAAAATCAGCTGCTCGAAGTACCTGAT
TCCATTTTGCAAACAGATGGGGCAGTCAGTGAGAAAACAGCTCAATTGCTGGCTGAACATGTACGAGAAAAGCTGGGAGC
TACTTACGGGATTTCTGTTACGGGAGTGGCTGGACCCGATCCTTCCGAGGGCAAGCCTGTTGGCATTGTATATGTAGGGA
TCGCGGCAGAAGGAATGCCCACAGTTGTAAAAGAGCTGCGCCTTGCCGGAAGAAGGCATGCAATCGTTGGGCGTGCCGCT
AAATACGCGTTGTTTTATGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.332

99.758

0.512
  cinA Streptococcus mitis SK321

48.267

97.585

0.471
  cinA Streptococcus mitis NCTC 12261

48.02

97.585

0.469
  cinA Streptococcus pneumoniae TIGR4

47.772

97.585

0.466
  cinA Streptococcus pneumoniae Rx1

47.525

97.585

0.464
  cinA Streptococcus pneumoniae R6

47.525

97.585

0.464
  cinA Streptococcus pneumoniae D39

47.277

97.585

0.461
  cinA Streptococcus mutans UA159

45.113

96.377

0.435
  cinA Streptococcus suis isolate S10

40

95.411

0.382

Multiple sequence alignment