Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL133_RS00255 Genome accession   NZ_LR134323
Coordinates   51677..52819 (+) Length   380 a.a.
NCBI ID   WP_006739035.1    Uniprot ID   G5KGR5
Organism   Streptococcus urinalis strain NCTC13766     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 46677..57819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS00235 (NCTC13766_00048) ruvA 49085..49678 (+) 594 WP_006739095.1 Holliday junction branch migration protein RuvA -
  EL133_RS00240 (NCTC13766_00049) - 49687..50251 (+) 565 Protein_46 DNA-3-methyladenine glycosylase I -
  EL133_RS00250 (NCTC13766_00050) cinA 50348..51607 (+) 1260 WP_006740047.1 competence/damage-inducible protein A Machinery gene
  EL133_RS00255 (NCTC13766_00051) recA 51677..52819 (+) 1143 WP_006739035.1 recombinase RecA Machinery gene
  EL133_RS00260 (NCTC13766_00052) spx 53028..53426 (+) 399 WP_006739023.1 transcriptional regulator Spx -
  EL133_RS00265 (NCTC13766_00053) - 53551..53820 (+) 270 WP_006738453.1 IreB family regulatory phosphoprotein -
  EL133_RS00270 (NCTC13766_00054) ruvX 53817..54236 (+) 420 WP_006740248.1 Holliday junction resolvase RuvX -
  EL133_RS00275 (NCTC13766_00055) - 54246..54557 (+) 312 WP_006739290.1 DUF1292 domain-containing protein -
  EL133_RS00280 (NCTC13766_00056) - 54785..56344 (+) 1560 WP_006739923.1 hypothetical protein -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 41186.63 Da        Isoelectric Point: 4.8956

>NTDB_id=1121502 EL133_RS00255 WP_006739035.1 51677..52819(+) (recA) [Streptococcus urinalis strain NCTC13766]
MAKKVKKTEEISKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDDLLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTVAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQRDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGNKIGQGSE
NAKRFLADNQDIFDEIDHKVRVHYGLIEDDQIEKNETKTVEENNESELTLDLDDAIELED

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1121502 EL133_RS00255 WP_006739035.1 51677..52819(+) (recA) [Streptococcus urinalis strain NCTC13766]
TTGGCAAAAAAAGTTAAAAAGACTGAAGAAATTAGCAAAAAATTTGGTGACGAACGTCGTAAAGCATTGGATGATGCCTT
AAAAAATATTGAAAAAGATTTTGGAAAAGGTGCAGTTATGCGTCTTGGTGAACGAGCAGAACAAAAAGTTCAAGTAATGA
GTTCTGGAAGTTTGGCACTTGATATTGCTTTGGGTGCGGGTGGTTATCCAAAAGGACGTATTATCGAAATATATGGTCCT
GAGAGTTCAGGTAAAACCACAGTAGCTTTACATGCGGTTGCGCAAGCTCAAAAAGACGGCGGAATTGCTGCTTTTATTGA
TGCTGAACACGCACTTGATCCAGCTTATGCAGCAGCACTTGGGGTTAATATTGATGATTTGTTACTTTCACAACCTGATT
CAGGAGAACAAGGACTTGAGATTGCTGGCAAATTAATTGACTCTGGTGCAGTTGATTTAGTTGTTATTGATTCAGTTGCT
GCCTTAGTACCTCGTGCAGAAATCGATGGTGATATTGGTGATAGTCATGTTGGTTTACAAGCCAGAATGATGAGTCAAGC
TATGCGCAAATTATCAGCATCAATTAATAAAACGAAAACAGTTGCAATCTTTATTAACCAATTGCGTGAAAAAGTTGGTA
TTATGTTTGGTAATCCTGAGACAACTCCTGGTGGACGTGCATTAAAATTCTATGCTTCAGTACGTTTGGATGTTCGTGGT
AATACGCAAATAAAAGGTACTGGTGATCAACGTGATCAAAATGTTGGCAAAGAAACCAAAATTAAAGTTGTTAAAAATAA
AGTTGCTCCACCATTTAAAGAAGCTTTCGTTGAAATTATGTATGGAGAAGGTATTTCTCGTACAGGTGAGTTAGTAAAAA
TAGCAACTGATTTGGATATTATTCAAAAAGCAGGTGCTTGGTATTCTTACAATGGTAACAAAATTGGACAAGGTTCAGAA
AATGCTAAACGTTTCCTAGCAGATAATCAAGACATATTTGATGAAATTGATCATAAAGTTCGCGTTCATTATGGATTAAT
TGAAGATGATCAAATTGAAAAAAATGAAACAAAAACAGTAGAAGAAAATAATGAGTCTGAATTAACTTTAGATCTTGATG
ATGCTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KGR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

88.773

100

0.895
  recA Streptococcus pyogenes NZ131

87.368

100

0.874
  recA Streptococcus mitis NCTC 12261

85.864

100

0.863
  recA Streptococcus mitis SK321

85.079

100

0.855
  recA Streptococcus pneumoniae Rx1

83.679

100

0.85
  recA Streptococcus pneumoniae D39

83.679

100

0.85
  recA Streptococcus pneumoniae R6

83.679

100

0.85
  recA Streptococcus pneumoniae TIGR4

83.679

100

0.85
  recA Lactococcus lactis subsp. cremoris KW2

76.068

92.368

0.703
  recA Latilactobacillus sakei subsp. sakei 23K

70

86.842

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

86.579

0.595
  recA Glaesserella parasuis strain SC1401

55.376

97.895

0.542
  recA Acinetobacter baumannii D1279779

62.769

85.526

0.537
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.882

89.211

0.534
  recA Acinetobacter baylyi ADP1

62.154

85.526

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.479

87.895

0.532
  recA Neisseria gonorrhoeae strain FA1090

60.725

87.105

0.529
  recA Neisseria gonorrhoeae MS11

60.725

87.105

0.529
  recA Neisseria gonorrhoeae MS11

60.725

87.105

0.529
  recA Vibrio cholerae strain A1552

60.308

85.526

0.516
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.308

85.526

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

87.105

0.511
  recA Ralstonia pseudosolanacearum GMI1000

60.568

83.421

0.505
  recA Helicobacter pylori strain NCTC11637

57.576

86.842

0.5
  recA Helicobacter pylori 26695

57.576

86.842

0.5
  recA Pseudomonas stutzeri DSM 10701

58.154

85.526

0.497

Multiple sequence alignment