Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL084_RS08435 Genome accession   NZ_LR134292
Coordinates   1682079..1683233 (-) Length   384 a.a.
NCBI ID   WP_004233517.1    Uniprot ID   A0A1G9LPJ2
Organism   Streptococcus equinus strain NCTC10389     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1677079..1688233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS08410 (NCTC10389_01767) - 1678372..1679949 (-) 1578 WP_126440799.1 DUF2079 domain-containing protein -
  EL084_RS09400 (NCTC10389_01768) - 1679992..1680120 (-) 129 WP_021143294.1 hypothetical protein -
  EL084_RS08415 (NCTC10389_01769) - 1680219..1680536 (-) 318 WP_004233505.1 DUF1292 domain-containing protein -
  EL084_RS08420 (NCTC10389_01770) ruvX 1680569..1680988 (-) 420 WP_004233508.1 Holliday junction resolvase RuvX -
  EL084_RS08425 (NCTC10389_01771) - 1680985..1681254 (-) 270 WP_004233510.1 IreB family regulatory phosphoprotein -
  EL084_RS08430 (NCTC10389_01772) spx 1681484..1681882 (-) 399 WP_004233512.1 transcriptional regulator Spx -
  EL084_RS08435 (NCTC10389_01773) recA 1682079..1683233 (-) 1155 WP_004233517.1 recombinase RecA Machinery gene
  EL084_RS08440 (NCTC10389_01774) cinA 1683283..1684542 (-) 1260 WP_126440801.1 competence/damage-inducible protein A Machinery gene
  EL084_RS08445 (NCTC10389_01775) - 1684655..1685857 (-) 1203 WP_126440934.1 MFS transporter -
  EL084_RS08450 (NCTC10389_01776) - 1685980..1686537 (-) 558 WP_044023434.1 DNA-3-methyladenine glycosylase I -
  EL084_RS08455 (NCTC10389_01777) ruvA 1686567..1687160 (-) 594 WP_126440803.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41151.66 Da        Isoelectric Point: 4.9093

>NTDB_id=1120465 EL084_RS08435 WP_004233517.1 1682079..1683233(-) (recA) [Streptococcus equinus strain NCTC10389]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSTGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIINKAGAWFSYNGEKIGQGSE
NAKKYLADHPDVFDEIDHKVRVHYGLVEETEDEKAANAADESAATSEKADEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1120465 EL084_RS08435 WP_004233517.1 1682079..1683233(-) (recA) [Streptococcus equinus strain NCTC10389]
TTGGCTAAAAAGACAAAGAAAACAGAAGCTATCACGAAGAAATTCGGTGATGAGCGTAAAAAAGCACTTGATGATGCTTT
GAAATTAATCGAAAAAGATTTTGGTAAAGGAGCGGTCATGCGTCTTGGTGAGCGTGCTGAACAAAAAGTTCAAGTCATGA
GTACTGGTAGTCTGGCGCTTGATATTGCCCTAGGTGCCGGTGGATACCCTAAAGGACGTATCATTGAAATCTATGGTCCT
GAAAGTTCTGGTAAAACAACAGTAGCTCTTCATGCTGTAGCACAGGCACAAAAAGAAGGTGGTATTGCAGCCTTTATCGA
TGCCGAACATGCTCTTGATCCAGCTTATGCAGCAGCTCTTGGTGTTAATATCGATGAACTTCTTTTGTCACAACCTGATT
CAGGTGAACAAGGTCTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCTGTTGACCTTGTTGTTGTCGACTCTGTTGCC
GCTCTTGTACCTCGTGCAGAAATTGATGGTGACATTGGTGATAACCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
TATGCGTAAACTCTCAGCATCTATCAACAAAACAAAAACAATCGCTATCTTCATCAACCAATTGCGTGAAAAAGTTGGTG
TCATGTTTGGTAACCCAGAAACAACACCTGGTGGACGTGCTCTTAAATTCTATTCATCAGTTCGTCTTGATGTTCGTGGA
AATACACAAATTAAAGGTACTGGTGACCAAAAAGATAGCAACATTGGTAAAGAAACTAAAATCAAAGTTGTTAAAAACAA
AGTTGCCCCACCGTTTAAAACTGCTGAAGTGGAAATCATGTACGGTGAAGGAATTTCGCGTACAGGTGAGTTGATTAAAA
TCGCTAGTGATTTGGATATTATCAACAAAGCTGGTGCATGGTTCTCTTACAATGGAGAGAAAATTGGTCAAGGTTCTGAA
AATGCTAAGAAATATTTGGCAGATCACCCAGATGTCTTTGACGAAATTGATCACAAAGTTCGTGTTCATTATGGACTTGT
TGAAGAAACTGAAGATGAAAAAGCAGCAAATGCTGCTGACGAATCAGCTGCAACTTCTGAAAAAGCAGATGAAGTTGTTC
TTGACCTAGATGATGCGATTGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G9LPJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.323

100

0.893
  recA Streptococcus mutans UA159

88.052

100

0.883
  recA Streptococcus mitis NCTC 12261

85.64

99.74

0.854
  recA Streptococcus mitis SK321

85.64

99.74

0.854
  recA Streptococcus pneumoniae D39

84.935

100

0.852
  recA Streptococcus pneumoniae Rx1

84.935

100

0.852
  recA Streptococcus pneumoniae R6

84.935

100

0.852
  recA Streptococcus pneumoniae TIGR4

84.935

100

0.852
  recA Lactococcus lactis subsp. cremoris KW2

78

91.146

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

69.122

91.927

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

68.997

85.677

0.591
  recA Neisseria gonorrhoeae strain FA1090

60.286

91.146

0.549
  recA Neisseria gonorrhoeae MS11

60.286

91.146

0.549
  recA Neisseria gonorrhoeae MS11

60.286

91.146

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.767

88.281

0.536
  recA Acinetobacter baylyi ADP1

57.465

92.448

0.531
  recA Glaesserella parasuis strain SC1401

59.706

88.542

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

84.115

0.523
  recA Acinetobacter baumannii D1279779

61.35

84.896

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

84.635

0.516
  recA Vibrio cholerae strain A1552

60.923

84.635

0.516
  recA Pseudomonas stutzeri DSM 10701

56.772

90.365

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

86.198

0.508
  recA Helicobacter pylori 26695

58.084

86.979

0.505
  recA Helicobacter pylori strain NCTC11637

58.084

86.979

0.505
  recA Ralstonia pseudosolanacearum GMI1000

59.306

82.552

0.49

Multiple sequence alignment