Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL078_RS08900 Genome accession   NZ_LR134282
Coordinates   1789700..1790854 (-) Length   384 a.a.
NCBI ID   WP_004233517.1    Uniprot ID   A0A1G9LPJ2
Organism   Streptococcus equinus strain NCTC8140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1784700..1795854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS08875 (NCTC8140_01800) - 1785992..1787569 (-) 1578 WP_126438159.1 DUF2079 domain-containing protein -
  EL078_RS09445 (NCTC8140_01801) - 1787612..1787740 (-) 129 WP_267878376.1 hypothetical protein -
  EL078_RS08880 (NCTC8140_01802) - 1787839..1788156 (-) 318 WP_006531413.1 DUF1292 domain-containing protein -
  EL078_RS08885 (NCTC8140_01803) ruvX 1788189..1788608 (-) 420 WP_004233508.1 Holliday junction resolvase RuvX -
  EL078_RS08890 (NCTC8140_01804) - 1788605..1788874 (-) 270 WP_004233510.1 IreB family regulatory phosphoprotein -
  EL078_RS08895 (NCTC8140_01805) spx 1789104..1789502 (-) 399 WP_004233512.1 transcriptional regulator Spx -
  EL078_RS08900 (NCTC8140_01806) recA 1789700..1790854 (-) 1155 WP_004233517.1 recombinase RecA Machinery gene
  EL078_RS08905 (NCTC8140_01807) cinA 1790904..1792163 (-) 1260 WP_074483864.1 competence/damage-inducible protein A Machinery gene
  EL078_RS08910 (NCTC8140_01808) - 1792277..1793479 (-) 1203 WP_033153546.1 MFS transporter -
  EL078_RS08915 (NCTC8140_01809) - 1793602..1794159 (-) 558 WP_164554336.1 DNA-3-methyladenine glycosylase I -
  EL078_RS08920 (NCTC8140_01810) ruvA 1794189..1794782 (-) 594 WP_024344431.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41151.66 Da        Isoelectric Point: 4.9093

>NTDB_id=1120002 EL078_RS08900 WP_004233517.1 1789700..1790854(-) (recA) [Streptococcus equinus strain NCTC8140]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSTGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIINKAGAWFSYNGEKIGQGSE
NAKKYLADHPDVFDEIDHKVRVHYGLVEETEDEKAANAADESAATSEKADEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1120002 EL078_RS08900 WP_004233517.1 1789700..1790854(-) (recA) [Streptococcus equinus strain NCTC8140]
TTGGCTAAAAAGACAAAGAAAACAGAAGCTATCACGAAGAAATTCGGTGATGAGCGTAAAAAAGCACTTGATGATGCTTT
GAAATTAATTGAAAAAGATTTTGGTAAAGGAGCGGTCATGCGCCTTGGTGAGCGTGCTGAACAAAAAGTTCAAGTCATGA
GTACTGGTAGTCTGGCGCTTGATATTGCCCTAGGTGCTGGTGGATACCCTAAAGGACGTATTATTGAAATCTATGGTCCT
GAAAGTTCAGGTAAAACAACAGTAGCTCTTCATGCCGTGGCACAAGCACAAAAAGAAGGTGGTATTGCAGCCTTTATCGA
TGCCGAACATGCTCTTGACCCAGCTTATGCAGCAGCTCTTGGTGTTAATATCGATGAACTTCTTTTGTCACAACCTGACT
CAGGTGAACAAGGTCTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCTGTTGACCTTGTTGTTGTCGACTCTGTTGCC
GCTCTTGTACCTCGTGCAGAAATTGATGGTGACATTGGTGATAACCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
TATGCGTAAACTTTCAGCATCTATCAACAAAACAAAAACAATCGCTATCTTTATCAACCAATTGCGTGAAAAAGTTGGTG
TCATGTTTGGTAATCCAGAAACAACACCTGGTGGACGTGCTCTTAAATTCTATTCATCAGTTCGTCTTGATGTTCGTGGA
AATACACAAATTAAAGGTACTGGTGACCAAAAAGATAGCAACATCGGTAAAGAAACTAAAATCAAAGTTGTTAAAAACAA
AGTTGCTCCACCGTTTAAAACTGCTGAAGTGGAAATTATGTACGGTGAAGGAATTTCACGTACAGGTGAGTTGATTAAAA
TCGCTAGTGATTTGGATATCATCAACAAAGCTGGTGCATGGTTCTCTTACAATGGTGAGAAAATTGGTCAAGGTTCTGAA
AATGCTAAGAAATATTTGGCAGATCACCCAGATGTCTTTGACGAAATTGATCACAAAGTTCGTGTTCATTATGGACTTGT
TGAAGAAACTGAAGATGAAAAAGCAGCAAATGCTGCTGACGAATCAGCTGCAACTTCTGAAAAAGCAGATGAAGTTGTTC
TTGACCTAGACGATGCGATTGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G9LPJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.323

100

0.893
  recA Streptococcus mutans UA159

88.052

100

0.883
  recA Streptococcus mitis NCTC 12261

85.64

99.74

0.854
  recA Streptococcus mitis SK321

85.64

99.74

0.854
  recA Streptococcus pneumoniae D39

84.935

100

0.852
  recA Streptococcus pneumoniae Rx1

84.935

100

0.852
  recA Streptococcus pneumoniae R6

84.935

100

0.852
  recA Streptococcus pneumoniae TIGR4

84.935

100

0.852
  recA Lactococcus lactis subsp. cremoris KW2

78

91.146

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

69.122

91.927

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

68.997

85.677

0.591
  recA Neisseria gonorrhoeae strain FA1090

60.286

91.146

0.549
  recA Neisseria gonorrhoeae MS11

60.286

91.146

0.549
  recA Neisseria gonorrhoeae MS11

60.286

91.146

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.767

88.281

0.536
  recA Acinetobacter baylyi ADP1

57.465

92.448

0.531
  recA Glaesserella parasuis strain SC1401

59.706

88.542

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

84.115

0.523
  recA Acinetobacter baumannii D1279779

61.35

84.896

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

84.635

0.516
  recA Vibrio cholerae strain A1552

60.923

84.635

0.516
  recA Pseudomonas stutzeri DSM 10701

56.772

90.365

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

86.198

0.508
  recA Helicobacter pylori 26695

58.084

86.979

0.505
  recA Helicobacter pylori strain NCTC11637

58.084

86.979

0.505
  recA Ralstonia pseudosolanacearum GMI1000

59.306

82.552

0.49

Multiple sequence alignment