Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   EL086_RS00350 Genome accession   NZ_LR134274
Coordinates   61165..62304 (+) Length   379 a.a.
NCBI ID   WP_002886327.1    Uniprot ID   A0AB33ZAI2
Organism   Streptococcus salivarius strain NCTC8618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 56165..67304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL086_RS00330 (NCTC8618_02480) - 58233..58454 (+) 222 WP_038675022.1 hypothetical protein -
  EL086_RS00335 (NCTC8618_02481) ruvA 58611..59201 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA -
  EL086_RS00340 (NCTC8618_02482) - 59210..59764 (+) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  EL086_RS00345 (NCTC8618_02483) cinA 59861..61129 (+) 1269 WP_014633777.1 competence/damage-inducible protein A Machinery gene
  EL086_RS00350 (NCTC8618_02484) recA 61165..62304 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  EL086_RS00355 (NCTC8618_02485) spx 62472..62870 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 40951.51 Da        Isoelectric Point: 4.7970

>NTDB_id=1119792 EL086_RS00350 WP_002886327.1 61165..62304(+) (recA) [Streptococcus salivarius strain NCTC8618]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPDIFEEIDHKVRVHYGLIEPDEEDIVEEAQVEETSDELVLDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=1119792 EL086_RS00350 WP_002886327.1 61165..62304(+) (recA) [Streptococcus salivarius strain NCTC8618]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATTACAAAGAAATTTGGAGATGAGCGTCGTAAAGCACTTGACGATGCTTT
GAAGAATATTGAAAAAGATTTTGGTAAGGGTGCGGTTATGCGTCTTGGTGAGCGTGCAGAGCAGAAAGTTCAAGTTATGA
GCTCAGGCTCGCTAGCTTTGGATATTGCTCTTGGTGCAGGTGGTTATCCTAAAGGTCGTATTATCGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTAGCCCTCCATGCTGTTGCTCAGACACAAAAAGAAGGCGGAATTGCTGCCTTTATCGA
TGCAGAGCATGCCCTTGACCCTGCTTATGCGGCAGCCCTAGGTGTTAATATTGATGAGCTTCTTTTGTCACAACCTGATT
CAGGTGAACAAGGTCTCGAAATTGCTGGTAAGCTGATTGACTCTGGTGCAGTTGATTTGGTTGTTGTTGACTCAGTTGCA
GCCTTGGTACCTCGAGCAGAAATTGATGGAGATATTGGTGACAGCCATGTCGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAGCTTTCTGCTTCTATCAATAAAACAAAAACAATTGCTATCTTCATTAACCAATTGCGTGAAAAAGTTGGCA
TTATGTTTGGTAATCCAGAAACAACCCCTGGTGGACGTGCTCTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGA
AATACGCAAATCAAAGGGACTGGTGATAAAAAAGACCAAAATGTTGGTAAGGAAACTAAAATTAAGGTTGTCAAAAACAA
GGTTGCTCCACCATTTAAAGAAGCCTTTGTTGAAATTATGTATGGTGAAGGGATTTCCCAAACAGGTGAGCTTGTAAAAA
TCGCTAGTGACTTAGGCATTATTCAAAAAGCTGGAGCATGGTTCTCATATAATGGTGAGAAGATTGGTCAAGGGTCTGAA
AATGCTAAAAAATATTTGGCAGATCATCCAGATATTTTTGAAGAAATTGATCATAAAGTACGTGTACACTATGGTTTAAT
TGAACCAGATGAAGAGGATATTGTTGAAGAAGCACAAGTTGAAGAAACATCTGATGAACTTGTTTTAGACCTCGATTCAA
CCATTGAAATTGAGGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.295

100

0.902

  recA Streptococcus pyogenes NZ131

89.974

100

0.9

  recA Streptococcus mitis NCTC 12261

86.423

100

0.873

  recA Streptococcus mitis SK321

86.352

100

0.868

  recA Streptococcus pneumoniae Rx1

85.195

100

0.865

  recA Streptococcus pneumoniae D39

85.195

100

0.865

  recA Streptococcus pneumoniae R6

85.195

100

0.865

  recA Streptococcus pneumoniae TIGR4

85.195

100

0.865

  recA Lactococcus lactis subsp. cremoris KW2

78

92.348

0.72

  recA Latilactobacillus sakei subsp. sakei 23K

69.231

89.182

0.617

  recA Bacillus subtilis subsp. subtilis str. 168

68.389

86.807

0.594

  recA Glaesserella parasuis strain SC1401

56.216

97.625

0.549

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.472

89.446

0.541

  recA Acinetobacter baumannii D1279779

62.462

85.752

0.536

  recA Acinetobacter baylyi ADP1

62.154

85.752

0.533

  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53

  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53

  recA Neisseria gonorrhoeae strain FA1090

60.725

87.335

0.53

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.224

0.53

  recA Vibrio cholerae strain A1552

58.944

89.974

0.53

  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.944

89.974

0.53

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.522

91.029

0.515

  recA Helicobacter pylori strain NCTC11637

56.305

89.974

0.507

  recA Helicobacter pylori 26695

56.305

89.974

0.507

  recA Ralstonia pseudosolanacearum GMI1000

57.576

87.071

0.501

  recA Pseudomonas stutzeri DSM 10701

58.154

85.752

0.499


Multiple sequence alignment