Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | EL068_RS07465 | Genome accession | NZ_LR134242 |
| Coordinates | 1548559..1549605 (-) | Length | 348 a.a. |
| NCBI ID | WP_002451246.1 | Uniprot ID | A0A2T4Q2T6 |
| Organism | Staphylococcus warneri strain NCTC4133 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1545735..1620018 | 1548559..1549605 | within | 0 |
Gene organization within MGE regions
Location: 1545735..1620018
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL068_RS07455 (NCTC4133_01521) | - | 1546216..1546431 (+) | 216 | WP_002467042.1 | hypothetical protein | - |
| EL068_RS07460 (NCTC4133_01522) | rny | 1546553..1548112 (-) | 1560 | WP_015365062.1 | ribonuclease Y | - |
| EL068_RS07465 (NCTC4133_01523) | recA | 1548559..1549605 (-) | 1047 | WP_002451246.1 | recombinase RecA | Machinery gene |
| EL068_RS07470 (NCTC4133_01524) | - | 1549772..1550923 (-) | 1152 | WP_126510388.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| EL068_RS07475 (NCTC4133_01525) | pgsA | 1551096..1551671 (-) | 576 | WP_015365063.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| EL068_RS07480 (NCTC4133_01526) | - | 1551702..1552094 (-) | 393 | WP_002465806.1 | helix-turn-helix domain-containing protein | - |
| EL068_RS07485 (NCTC4133_01527) | - | 1552115..1552951 (-) | 837 | WP_015365064.1 | YmfK family protein | - |
| EL068_RS07490 (NCTC4133_01528) | ymfI | 1553086..1553790 (-) | 705 | WP_002465810.1 | elongation factor P 5-aminopentanone reductase | - |
| EL068_RS07495 (NCTC4133_01529) | yfmH | 1553787..1555076 (-) | 1290 | WP_015365066.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| EL068_RS07500 (NCTC4133_01530) | yfmF | 1555076..1556362 (-) | 1287 | WP_058709437.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| EL068_RS07505 (NCTC4133_01531) | - | 1556375..1557088 (-) | 714 | WP_126510389.1 | GntR family transcriptional regulator | - |
| EL068_RS11895 | - | 1557091..1558542 (-) | 1452 | Protein_1449 | DNA translocase FtsK | - |
| EL068_RS11900 | - | 1558654..1559487 (-) | 834 | Protein_1450 | cell division protein FtsK | - |
| EL068_RS07515 (NCTC4133_01533) | rnjB | 1559723..1561396 (-) | 1674 | WP_015365069.1 | ribonuclease J2 | - |
| EL068_RS07525 | pnp | 1561583..1563682 (-) | 2100 | WP_126510390.1 | polyribonucleotide nucleotidyltransferase | - |
| EL068_RS07530 (NCTC4133_01536) | rpsO | 1563818..1564087 (-) | 270 | WP_002450539.1 | 30S ribosomal protein S15 | - |
| EL068_RS07535 (NCTC4133_01537) | ribF | 1564201..1565172 (-) | 972 | WP_002466033.1 | riboflavin biosynthesis protein RibF | - |
| EL068_RS07540 (NCTC4133_01538) | truB | 1565185..1566102 (-) | 918 | WP_126510391.1 | tRNA pseudouridine(55) synthase TruB | - |
| EL068_RS07545 (NCTC4133_01539) | rbfA | 1566255..1566605 (-) | 351 | WP_002466047.1 | 30S ribosome-binding factor RbfA | - |
| EL068_RS07550 (NCTC4133_01540) | infB | 1566745..1568910 (-) | 2166 | WP_126510392.1 | translation initiation factor IF-2 | - |
| EL068_RS07555 (NCTC4133_01541) | - | 1568915..1569232 (-) | 318 | WP_058709403.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| EL068_RS07560 (NCTC4133_01542) | rnpM | 1569229..1569516 (-) | 288 | WP_002450545.1 | RNase P modulator RnpM | - |
| EL068_RS07565 (NCTC4133_01543) | nusA | 1569536..1570768 (-) | 1233 | WP_015365073.1 | transcription termination factor NusA | - |
| EL068_RS07570 (NCTC4133_01544) | rimP | 1570789..1571256 (-) | 468 | WP_058709404.1 | ribosome maturation factor RimP | - |
| EL068_RS07575 (NCTC4133_01545) | - | 1571438..1575748 (-) | 4311 | WP_126510645.1 | PolC-type DNA polymerase III | - |
| EL068_RS07580 (NCTC4133_01546) | - | 1576016..1577719 (-) | 1704 | WP_058709406.1 | proline--tRNA ligase | - |
| EL068_RS07585 (NCTC4133_01547) | rseP | 1577739..1579025 (-) | 1287 | WP_002466035.1 | RIP metalloprotease RseP | - |
| EL068_RS07590 (NCTC4133_01548) | - | 1579268..1580050 (-) | 783 | WP_126510393.1 | phosphatidate cytidylyltransferase | - |
| EL068_RS07595 (NCTC4133_01549) | - | 1580054..1580824 (-) | 771 | WP_002466060.1 | isoprenyl transferase | - |
| EL068_RS07600 (NCTC4133_01550) | frr | 1581057..1581611 (-) | 555 | WP_126510394.1 | ribosome recycling factor | - |
| EL068_RS07605 (NCTC4133_01551) | pyrH | 1581627..1582349 (-) | 723 | WP_002450554.1 | UMP kinase | - |
| EL068_RS07610 (NCTC4133_01552) | tsf | 1582490..1583368 (-) | 879 | WP_058709409.1 | translation elongation factor Ts | - |
| EL068_RS07615 (NCTC4133_01553) | rpsB | 1583520..1584308 (-) | 789 | WP_002466032.1 | 30S ribosomal protein S2 | - |
| EL068_RS07620 (NCTC4133_01554) | codY | 1584615..1585388 (-) | 774 | WP_002450557.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| EL068_RS07625 (NCTC4133_01555) | hslU | 1585412..1586815 (-) | 1404 | WP_015365077.1 | ATP-dependent protease ATPase subunit HslU | - |
| EL068_RS07630 (NCTC4133_01556) | hslV | 1586904..1587449 (-) | 546 | WP_002450559.1 | ATP-dependent protease subunit HslV | - |
| EL068_RS07635 (NCTC4133_01557) | xerC | 1587446..1588339 (-) | 894 | WP_002466041.1 | tyrosine recombinase XerC | - |
| EL068_RS07640 (NCTC4133_01558) | trmFO | 1588504..1589811 (-) | 1308 | WP_002466058.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| EL068_RS07645 (NCTC4133_01559) | topA | 1589928..1592003 (-) | 2076 | WP_186330030.1 | type I DNA topoisomerase | - |
| EL068_RS07650 (NCTC4133_01560) | dprA | 1592181..1593056 (-) | 876 | WP_415239101.1 | DNA-processing protein DprA | Machinery gene |
| EL068_RS07655 (NCTC4133_01561) | sucD | 1593290..1594195 (-) | 906 | WP_002466045.1 | succinate--CoA ligase subunit alpha | - |
| EL068_RS07660 (NCTC4133_01562) | sucC | 1594217..1595383 (-) | 1167 | WP_002466034.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| EL068_RS07665 (NCTC4133_01563) | - | 1595491..1596261 (-) | 771 | WP_126510397.1 | ribonuclease HII | - |
| EL068_RS07670 (NCTC4133_01564) | ylqF | 1596254..1597129 (-) | 876 | WP_058709412.1 | ribosome biogenesis GTPase YlqF | - |
| EL068_RS07675 (NCTC4133_01565) | - | 1597429..1600029 (+) | 2601 | WP_058709413.1 | YfhO family protein | - |
| EL068_RS07680 (NCTC4133_01566) | - | 1600022..1602631 (+) | 2610 | WP_058709414.1 | YfhO family protein | - |
| EL068_RS07685 (NCTC4133_01567) | rplS | 1602797..1603147 (-) | 351 | WP_002450570.1 | 50S ribosomal protein L19 | - |
| EL068_RS07690 (NCTC4133_01568) | trmD | 1603253..1603990 (-) | 738 | WP_002466037.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| EL068_RS07695 (NCTC4133_01569) | rimM | 1603990..1604493 (-) | 504 | WP_058709415.1 | ribosome maturation factor RimM | - |
| EL068_RS07700 (NCTC4133_01570) | rpsP | 1604661..1604936 (-) | 276 | WP_023375169.1 | 30S ribosomal protein S16 | - |
| EL068_RS07705 (NCTC4133_01571) | ffh | 1605712..1607079 (-) | 1368 | WP_126510398.1 | signal recognition particle protein | - |
| EL068_RS07710 (NCTC4133_01572) | - | 1607104..1607436 (-) | 333 | WP_002466066.1 | putative DNA-binding protein | - |
| EL068_RS07715 (NCTC4133_01573) | ftsY | 1607423..1608667 (-) | 1245 | WP_058709416.1 | signal recognition particle-docking protein FtsY | - |
| EL068_RS07720 (NCTC4133_01574) | smc | 1608664..1612233 (-) | 3570 | WP_015365084.1 | chromosome segregation protein SMC | - |
| EL068_RS07725 (NCTC4133_01575) | rnc | 1612386..1613114 (-) | 729 | WP_015365085.1 | ribonuclease III | - |
| EL068_RS07730 (NCTC4133_01576) | - | 1613225..1613458 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| EL068_RS07735 (NCTC4133_01577) | fabG | 1613767..1614501 (-) | 735 | WP_015365086.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| EL068_RS07740 (NCTC4133_01578) | fabD | 1614501..1615421 (-) | 921 | WP_119547432.1 | ACP S-malonyltransferase | - |
| EL068_RS07745 (NCTC4133_01579) | plsX | 1615414..1616400 (-) | 987 | WP_015365088.1 | phosphate acyltransferase PlsX | - |
| EL068_RS07750 (NCTC4133_01580) | fapR | 1616393..1616962 (-) | 570 | WP_058709419.1 | transcription factor FapR | - |
| EL068_RS07755 (NCTC4133_01581) | recG | 1617112..1619160 (-) | 2049 | WP_126510399.1 | ATP-dependent DNA helicase RecG | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37828.74 Da Isoelectric Point: 5.0133
>NTDB_id=1119338 EL068_RS07465 WP_002451246.1 1548559..1549605(-) (recA) [Staphylococcus warneri strain NCTC4133]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
ETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDQ
KLREKLGIFDGDVEEKEEDAPKSLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
ETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDQ
KLREKLGIFDGDVEEKEEDAPKSLFDEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=1119338 EL068_RS07465 WP_002451246.1 1548559..1549605(-) (recA) [Staphylococcus warneri strain NCTC4133]
TTGGATAACGAACGTCAAAAAGCTCTCGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTTTCAAGTACATCAAGTGGTTCAGTTACATTAGATAACGCATTAGGTGTAGGTG
GCTATCCTAAAGGAAGAATTATTGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTTGCATTACACGCTATTGCA
GAAACACAAAAAAACGGTGGCGTTGCTGCATTTATTGATGCTGAGCATGCATTAGATCCTGTTTATGCTCAAGCACTAGG
TGTAGATATTGATAATCTATATTTATCACAACCTGATCATGGGGAACAAGGTTTAGAGATTGCTGAAGCTTTTGTTCGTA
GTGGTGCAGTCGATATCGTAGTAGTCGATTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCACAAGCATTACGTAAACTATCTGGAGCTATTTCCAAATCAAATACGAC
TGCCATCTTCATTAACCAAATTCGTGAAAAAGTAGGTGTGATGTTCGGTAACCCTGAAACAACACCAGGCGGTAGAGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAACAATTGAAACAAGGACAAGAGATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAACAAAGTTGCACCACCATTCAGAGTTGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGCGAACTGATTGATCTTGGTGTTGAAAATGAAATCGTTGATAAATCTGGAGCTTGGTATTCATATAATG
GTGAAAGAATGGGACAAGGTAAAGAAAACGTTAAAACTTACCTTAAAGAAAATCCTCAAATTAAAGATGAAATCGATCAA
AAGCTACGTGAGAAGCTCGGTATTTTTGATGGTGATGTAGAAGAAAAAGAAGAAGACGCACCGAAGTCATTATTTGATGA
AGAATAA
TTGGATAACGAACGTCAAAAAGCTCTCGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTTTCAAGTACATCAAGTGGTTCAGTTACATTAGATAACGCATTAGGTGTAGGTG
GCTATCCTAAAGGAAGAATTATTGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTTGCATTACACGCTATTGCA
GAAACACAAAAAAACGGTGGCGTTGCTGCATTTATTGATGCTGAGCATGCATTAGATCCTGTTTATGCTCAAGCACTAGG
TGTAGATATTGATAATCTATATTTATCACAACCTGATCATGGGGAACAAGGTTTAGAGATTGCTGAAGCTTTTGTTCGTA
GTGGTGCAGTCGATATCGTAGTAGTCGATTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCACAAGCATTACGTAAACTATCTGGAGCTATTTCCAAATCAAATACGAC
TGCCATCTTCATTAACCAAATTCGTGAAAAAGTAGGTGTGATGTTCGGTAACCCTGAAACAACACCAGGCGGTAGAGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAACAATTGAAACAAGGACAAGAGATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAACAAAGTTGCACCACCATTCAGAGTTGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGCGAACTGATTGATCTTGGTGTTGAAAATGAAATCGTTGATAAATCTGGAGCTTGGTATTCATATAATG
GTGAAAGAATGGGACAAGGTAAAGAAAACGTTAAAACTTACCTTAAAGAAAATCCTCAAATTAAAGATGAAATCGATCAA
AAGCTACGTGAGAAGCTCGGTATTTTTGATGGTGATGTAGAAGAAAAAGAAGAAGACGCACCGAAGTCATTATTTGATGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.