Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EL068_RS07650 Genome accession   NZ_LR134242
Coordinates   1592181..1593056 (-) Length   291 a.a.
NCBI ID   WP_415239101.1    Uniprot ID   -
Organism   Staphylococcus warneri strain NCTC4133     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1545735..1620018 1592181..1593056 within 0


Gene organization within MGE regions


Location: 1545735..1620018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL068_RS07455 (NCTC4133_01521) - 1546216..1546431 (+) 216 WP_002467042.1 hypothetical protein -
  EL068_RS07460 (NCTC4133_01522) rny 1546553..1548112 (-) 1560 WP_015365062.1 ribonuclease Y -
  EL068_RS07465 (NCTC4133_01523) recA 1548559..1549605 (-) 1047 WP_002451246.1 recombinase RecA Machinery gene
  EL068_RS07470 (NCTC4133_01524) - 1549772..1550923 (-) 1152 WP_126510388.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  EL068_RS07475 (NCTC4133_01525) pgsA 1551096..1551671 (-) 576 WP_015365063.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL068_RS07480 (NCTC4133_01526) - 1551702..1552094 (-) 393 WP_002465806.1 helix-turn-helix domain-containing protein -
  EL068_RS07485 (NCTC4133_01527) - 1552115..1552951 (-) 837 WP_015365064.1 YmfK family protein -
  EL068_RS07490 (NCTC4133_01528) ymfI 1553086..1553790 (-) 705 WP_002465810.1 elongation factor P 5-aminopentanone reductase -
  EL068_RS07495 (NCTC4133_01529) yfmH 1553787..1555076 (-) 1290 WP_015365066.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EL068_RS07500 (NCTC4133_01530) yfmF 1555076..1556362 (-) 1287 WP_058709437.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  EL068_RS07505 (NCTC4133_01531) - 1556375..1557088 (-) 714 WP_126510389.1 GntR family transcriptional regulator -
  EL068_RS11895 - 1557091..1558542 (-) 1452 Protein_1449 DNA translocase FtsK -
  EL068_RS11900 - 1558654..1559487 (-) 834 Protein_1450 cell division protein FtsK -
  EL068_RS07515 (NCTC4133_01533) rnjB 1559723..1561396 (-) 1674 WP_015365069.1 ribonuclease J2 -
  EL068_RS07525 pnp 1561583..1563682 (-) 2100 WP_126510390.1 polyribonucleotide nucleotidyltransferase -
  EL068_RS07530 (NCTC4133_01536) rpsO 1563818..1564087 (-) 270 WP_002450539.1 30S ribosomal protein S15 -
  EL068_RS07535 (NCTC4133_01537) ribF 1564201..1565172 (-) 972 WP_002466033.1 riboflavin biosynthesis protein RibF -
  EL068_RS07540 (NCTC4133_01538) truB 1565185..1566102 (-) 918 WP_126510391.1 tRNA pseudouridine(55) synthase TruB -
  EL068_RS07545 (NCTC4133_01539) rbfA 1566255..1566605 (-) 351 WP_002466047.1 30S ribosome-binding factor RbfA -
  EL068_RS07550 (NCTC4133_01540) infB 1566745..1568910 (-) 2166 WP_126510392.1 translation initiation factor IF-2 -
  EL068_RS07555 (NCTC4133_01541) - 1568915..1569232 (-) 318 WP_058709403.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  EL068_RS07560 (NCTC4133_01542) rnpM 1569229..1569516 (-) 288 WP_002450545.1 RNase P modulator RnpM -
  EL068_RS07565 (NCTC4133_01543) nusA 1569536..1570768 (-) 1233 WP_015365073.1 transcription termination factor NusA -
  EL068_RS07570 (NCTC4133_01544) rimP 1570789..1571256 (-) 468 WP_058709404.1 ribosome maturation factor RimP -
  EL068_RS07575 (NCTC4133_01545) - 1571438..1575748 (-) 4311 WP_126510645.1 PolC-type DNA polymerase III -
  EL068_RS07580 (NCTC4133_01546) - 1576016..1577719 (-) 1704 WP_058709406.1 proline--tRNA ligase -
  EL068_RS07585 (NCTC4133_01547) rseP 1577739..1579025 (-) 1287 WP_002466035.1 RIP metalloprotease RseP -
  EL068_RS07590 (NCTC4133_01548) - 1579268..1580050 (-) 783 WP_126510393.1 phosphatidate cytidylyltransferase -
  EL068_RS07595 (NCTC4133_01549) - 1580054..1580824 (-) 771 WP_002466060.1 isoprenyl transferase -
  EL068_RS07600 (NCTC4133_01550) frr 1581057..1581611 (-) 555 WP_126510394.1 ribosome recycling factor -
  EL068_RS07605 (NCTC4133_01551) pyrH 1581627..1582349 (-) 723 WP_002450554.1 UMP kinase -
  EL068_RS07610 (NCTC4133_01552) tsf 1582490..1583368 (-) 879 WP_058709409.1 translation elongation factor Ts -
  EL068_RS07615 (NCTC4133_01553) rpsB 1583520..1584308 (-) 789 WP_002466032.1 30S ribosomal protein S2 -
  EL068_RS07620 (NCTC4133_01554) codY 1584615..1585388 (-) 774 WP_002450557.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  EL068_RS07625 (NCTC4133_01555) hslU 1585412..1586815 (-) 1404 WP_015365077.1 ATP-dependent protease ATPase subunit HslU -
  EL068_RS07630 (NCTC4133_01556) hslV 1586904..1587449 (-) 546 WP_002450559.1 ATP-dependent protease subunit HslV -
  EL068_RS07635 (NCTC4133_01557) xerC 1587446..1588339 (-) 894 WP_002466041.1 tyrosine recombinase XerC -
  EL068_RS07640 (NCTC4133_01558) trmFO 1588504..1589811 (-) 1308 WP_002466058.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EL068_RS07645 (NCTC4133_01559) topA 1589928..1592003 (-) 2076 WP_186330030.1 type I DNA topoisomerase -
  EL068_RS07650 (NCTC4133_01560) dprA 1592181..1593056 (-) 876 WP_415239101.1 DNA-processing protein DprA Machinery gene
  EL068_RS07655 (NCTC4133_01561) sucD 1593290..1594195 (-) 906 WP_002466045.1 succinate--CoA ligase subunit alpha -
  EL068_RS07660 (NCTC4133_01562) sucC 1594217..1595383 (-) 1167 WP_002466034.1 ADP-forming succinate--CoA ligase subunit beta -
  EL068_RS07665 (NCTC4133_01563) - 1595491..1596261 (-) 771 WP_126510397.1 ribonuclease HII -
  EL068_RS07670 (NCTC4133_01564) ylqF 1596254..1597129 (-) 876 WP_058709412.1 ribosome biogenesis GTPase YlqF -
  EL068_RS07675 (NCTC4133_01565) - 1597429..1600029 (+) 2601 WP_058709413.1 YfhO family protein -
  EL068_RS07680 (NCTC4133_01566) - 1600022..1602631 (+) 2610 WP_058709414.1 YfhO family protein -
  EL068_RS07685 (NCTC4133_01567) rplS 1602797..1603147 (-) 351 WP_002450570.1 50S ribosomal protein L19 -
  EL068_RS07690 (NCTC4133_01568) trmD 1603253..1603990 (-) 738 WP_002466037.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  EL068_RS07695 (NCTC4133_01569) rimM 1603990..1604493 (-) 504 WP_058709415.1 ribosome maturation factor RimM -
  EL068_RS07700 (NCTC4133_01570) rpsP 1604661..1604936 (-) 276 WP_023375169.1 30S ribosomal protein S16 -
  EL068_RS07705 (NCTC4133_01571) ffh 1605712..1607079 (-) 1368 WP_126510398.1 signal recognition particle protein -
  EL068_RS07710 (NCTC4133_01572) - 1607104..1607436 (-) 333 WP_002466066.1 putative DNA-binding protein -
  EL068_RS07715 (NCTC4133_01573) ftsY 1607423..1608667 (-) 1245 WP_058709416.1 signal recognition particle-docking protein FtsY -
  EL068_RS07720 (NCTC4133_01574) smc 1608664..1612233 (-) 3570 WP_015365084.1 chromosome segregation protein SMC -
  EL068_RS07725 (NCTC4133_01575) rnc 1612386..1613114 (-) 729 WP_015365085.1 ribonuclease III -
  EL068_RS07730 (NCTC4133_01576) - 1613225..1613458 (-) 234 WP_001830184.1 acyl carrier protein -
  EL068_RS07735 (NCTC4133_01577) fabG 1613767..1614501 (-) 735 WP_015365086.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  EL068_RS07740 (NCTC4133_01578) fabD 1614501..1615421 (-) 921 WP_119547432.1 ACP S-malonyltransferase -
  EL068_RS07745 (NCTC4133_01579) plsX 1615414..1616400 (-) 987 WP_015365088.1 phosphate acyltransferase PlsX -
  EL068_RS07750 (NCTC4133_01580) fapR 1616393..1616962 (-) 570 WP_058709419.1 transcription factor FapR -
  EL068_RS07755 (NCTC4133_01581) recG 1617112..1619160 (-) 2049 WP_126510399.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33972.14 Da        Isoelectric Point: 8.7971

>NTDB_id=1119340 EL068_RS07650 WP_415239101.1 1592181..1593056(-) (dprA) [Staphylococcus warneri strain NCTC4133]
MNLNEHFLLKLYWSHFTTSQIHQFYRYHPHIFQMTSNEQETSLLCWITQHHPTLLSKFHKYKQINIVEIMKILRQLHVKY
ITFFDENYPYLLKEIYDYPFVLFYKGDKKLFLSNQTLAIVGARKCSNYTQEALQYLFPSFKEKNITIIFGLAEGADSEAH
IQALKIDLSTIAVLGFGHHYYYPRNLVSLRKNIEEKGLVISEYPPFSPIAKYKFPERNRIISGLSKGVLLTESNERSGSR
ITVDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGASMVVSAEDILQDYLN

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1119340 EL068_RS07650 WP_415239101.1 1592181..1593056(-) (dprA) [Staphylococcus warneri strain NCTC4133]
ATGAATTTGAACGAACACTTTTTACTTAAATTATACTGGTCACATTTTACAACCTCACAAATCCATCAATTTTATCGGTA
CCACCCTCATATTTTCCAAATGACTTCTAATGAACAAGAAACTTCATTATTATGTTGGATTACTCAACATCATCCTACGC
TTCTATCAAAATTTCATAAATATAAACAAATAAATATAGTAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATAT
ATCACTTTTTTCGACGAAAATTATCCTTATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAGGGAGA
TAAGAAATTATTTTTAAGTAATCAAACTTTGGCAATTGTTGGTGCTAGGAAATGTTCAAATTATACGCAAGAAGCACTAC
AATATCTTTTTCCTTCATTTAAAGAAAAAAATATTACGATTATTTTTGGGTTAGCAGAAGGTGCCGATAGTGAAGCACAC
ATACAAGCCTTGAAAATCGATTTATCAACCATTGCAGTATTAGGGTTTGGTCACCATTATTATTATCCTAGAAACTTAGT
TTCATTAAGAAAAAATATTGAAGAAAAGGGGTTAGTTATTTCGGAGTACCCACCATTTTCGCCAATTGCTAAGTATAAGT
TTCCAGAAAGAAATAGGATTATTAGTGGATTATCAAAAGGTGTATTATTAACTGAATCAAATGAAAGAAGTGGTAGCAGA
ATCACAGTTGATTGTGCATTAGAACAAAATAGAAATGTGTATGTTTTACCGGGTAAATTATTTGATTCAAAAACAAAAGG
AAATCTATTATTGCATCAAGAAGGAGCTTCTATGGTCGTTAGTGCTGAAGACATTTTACAAGACTATTTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

55.634

97.595

0.543
  dprA Staphylococcus aureus N315

55.634

97.595

0.543

Multiple sequence alignment