Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KHO06_RS13960 Genome accession   NZ_HG992751
Coordinates   3024682..3025725 (-) Length   347 a.a.
NCBI ID   WP_005425359.1    Uniprot ID   A0A6V7HKT7
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3019682..3030725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS13945 (ACOMICROBIO_LOCUS1874) - 3019879..3021066 (-) 1188 WP_005425356.1 aspartate kinase -
  KHO06_RS13950 (ACOMICROBIO_LOCUS1875) alaS 3021268..3023865 (-) 2598 WP_050919026.1 alanine--tRNA ligase -
  KHO06_RS13955 (ACOMICROBIO_LMKGKHOH_00030) recX 3024008..3024475 (-) 468 WP_005425358.1 recombination regulator RecX -
  KHO06_RS13960 (ACOMICROBIO_LOCUS1876) recA 3024682..3025725 (-) 1044 WP_005425359.1 recombinase RecA Machinery gene
  KHO06_RS13965 (ACOMICROBIO_LMKGKHOH_00032) pncC 3025926..3026408 (-) 483 WP_105066534.1 nicotinamide-nucleotide amidase -
  KHO06_RS13970 (ACOMICROBIO_LOCUS1877) mutS 3026494..3029055 (+) 2562 WP_081234591.1 DNA mismatch repair protein MutS -
  KHO06_RS13975 (ACOMICROBIO_LOCUS1878) rpoS 3029145..3030131 (-) 987 WP_005425361.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37428.87 Da        Isoelectric Point: 4.9743

>NTDB_id=1112486 KHO06_RS13960 WP_005425359.1 3024682..3025725(-) (recA) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANACNYLRENPEIGKTIDA
KLREMLLSPALPEAPESGEKSEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1112486 KHO06_RS13960 WP_005425359.1 3024682..3025725(-) (recA) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTTGAGCTGATTGCT
GCTGCACAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCATGCTCTAGATCCTGTATACGCGAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAGCCAGACACAGGTGAGCAAGCGCTAGAAATCTGTGACGCACTTGCACGTT
CTGGTGCTATCGACGTTATGGTTGTCGACTCAGTTGCAGCACTAACACCAAAAGCAGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCGATGCGCAAGCTAACGGGTAACCTAAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACAACAACTGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTAGTAGGTAACGAA
ACGCGCATCAAAGTTGTTAAGAACAAGATTGCTGCACCGTTTAAAGAAGCAAACACGCAAATCATGTACGGCCAAGGTTT
CAACCGCGAAGGCGAACTGATTGACCTAGGCGTGAAGCACAAGCTAGTTGAAAAAGCGGGTGCATGGTACAGCTACCAAG
GCGACAAGATCGGCCAAGGTAAAGCAAACGCTTGTAACTACCTACGCGAAAACCCAGAAATCGGTAAAACTATCGATGCT
AAACTGCGTGAAATGCTACTTTCACCAGCACTACCTGAAGCACCAGAATCGGGTGAAAAATCAGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7HKT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.441

94.813

0.905
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.441

94.813

0.905
  recA Acinetobacter baylyi ADP1

72.832

99.712

0.726
  recA Pseudomonas stutzeri DSM 10701

75.841

94.236

0.715
  recA Acinetobacter baumannii D1279779

75

94.524

0.709
  recA Glaesserella parasuis strain SC1401

70.859

93.948

0.666
  recA Neisseria gonorrhoeae MS11

69.018

93.948

0.648
  recA Neisseria gonorrhoeae MS11

69.018

93.948

0.648
  recA Neisseria gonorrhoeae strain FA1090

69.018

93.948

0.648
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.625

0.637
  recA Helicobacter pylori strain NCTC11637

60.882

97.983

0.597
  recA Helicobacter pylori 26695

60.588

97.983

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

91.931

0.585
  recA Streptococcus pneumoniae R6

62.539

93.084

0.582
  recA Streptococcus pneumoniae Rx1

62.539

93.084

0.582
  recA Streptococcus pneumoniae D39

62.539

93.084

0.582
  recA Streptococcus pneumoniae TIGR4

62.539

93.084

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Streptococcus mitis NCTC 12261

62.229

93.084

0.579
  recA Streptococcus mitis SK321

61.92

93.084

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.389

0.571
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

91.354

0.568
  recA Streptococcus pyogenes NZ131

60.615

93.66

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

59.215

95.389

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.062

93.084

0.559

Multiple sequence alignment