Detailed information NTG1112488

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KHO06_RS13975
• Genome accession: NZ_HG992751
• Coordinates: 3029145..3030131 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio sp. B1FIG11 isolate LMG10946-nano
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3024145..3035131

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHO06_RS13960 (ACOMICROBIO_LOCUS1876)	recA	3024682..3025725 (-)	1044	WP_005425359.1	recombinase RecA	Machinery gene
KHO06_RS13965 (ACOMICROBIO_LMKGKHOH_00032)	pncC	3025926..3026408 (-)	483	WP_105066534.1	nicotinamide-nucleotide amidase	-
KHO06_RS13970 (ACOMICROBIO_LOCUS1877)	mutS	3026494..3029055 (+)	2562	WP_081234591.1	DNA mismatch repair protein MutS	-
KHO06_RS13975 (ACOMICROBIO_LOCUS1878)	rpoS	3029145..3030131 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
KHO06_RS13980 (ACOMICROBIO_LOCUS1879)	-	3030212..3031135 (-)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
KHO06_RS13985 (ACOMICROBIO_LOCUS1880)	-	3031150..3031776 (-)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KHO06_RS13990 (ACOMICROBIO_LMKGKHOH_00037)	surE	3031776..3032552 (-)	777	WP_005531673.1	5'/3'-nucleotidase SurE	-
KHO06_RS13995 (ACOMICROBIO_LOCUS1881)	truD	3032552..3033595 (-)	1044	WP_212581766.1	tRNA pseudouridine(13) synthase TruD	-
KHO06_RS14000 (ACOMICROBIO_LOCUS1882)	ispF	3033641..3034117 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KHO06_RS14005 (ACOMICROBIO_LOCUS1883)	ispD	3034132..3034842 (-)	711	WP_212581767.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KHO06_RS14010 (ACOMICROBIO_LOCUS1884)	ftsB	3034844..3035125 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=1112488 KHO06_RS13975 WP_005425361.1 3029145..3030131(-) (rpoS) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1112488 KHO06_RS13975 WP_005425361.1 3029145..3030131(-) (rpoS) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGTAAGAGCCTAGATGCAACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857