Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HMPREF9319_RS09530 Genome accession   NZ_GL397128
Coordinates   1983134..1984288 (-) Length   384 a.a.
NCBI ID   WP_003066896.1    Uniprot ID   A0AAW6YNW1
Organism   Streptococcus equinus ATCC 700338     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1978134..1989288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS09505 (HMPREF9319_1987) - 1979272..1980861 (-) 1590 WP_041972992.1 membrane protein -
  HMPREF9319_RS11380 - 1980904..1981032 (-) 129 WP_259293846.1 hypothetical protein -
  HMPREF9319_RS09510 (HMPREF9319_1989) - 1981124..1981429 (-) 306 WP_003066884.1 DUF1292 domain-containing protein -
  HMPREF9319_RS09515 (HMPREF9319_1990) ruvX 1981462..1981881 (-) 420 WP_013852327.1 Holliday junction resolvase RuvX -
  HMPREF9319_RS09520 (HMPREF9319_1991) - 1981878..1982147 (-) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  HMPREF9319_RS09525 (HMPREF9319_1992) spx 1982466..1982864 (-) 399 WP_003066893.1 transcriptional regulator Spx -
  HMPREF9319_RS09530 (HMPREF9319_1993) recA 1983134..1984288 (-) 1155 WP_003066896.1 recombinase RecA Machinery gene
  HMPREF9319_RS09535 (HMPREF9319_1994) cinA 1984338..1985597 (-) 1260 WP_003066899.1 competence/damage-inducible protein A Machinery gene
  HMPREF9319_RS09540 (HMPREF9319_1996) - 1985967..1986920 (-) 954 WP_003066905.1 MFS transporter -
  HMPREF9319_RS11285 (HMPREF9319_1997) - 1987367..1987576 (-) 210 WP_003066908.1 hypothetical protein -
  HMPREF9319_RS11290 (HMPREF9319_1998) - 1987534..1987815 (-) 282 WP_003066911.1 hypothetical protein -
  HMPREF9319_RS11295 (HMPREF9319_1999) - 1987885..1988055 (-) 171 WP_231729898.1 hypothetical protein -
  HMPREF9319_RS11300 (HMPREF9319_2000) - 1988116..1988292 (-) 177 WP_003066916.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41282.84 Da        Isoelectric Point: 4.8031

>NTDB_id=1111710 HMPREF9319_RS09530 WP_003066896.1 1983134..1984288(-) (recA) [Streptococcus equinus ATCC 700338]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKIGQGSE
NAKKYLAEHPEVFDEIDHKVRVHYGLVEETEYEEAADVVEESAATNDNVDEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1111710 HMPREF9319_RS09530 WP_003066896.1 1983134..1984288(-) (recA) [Streptococcus equinus ATCC 700338]
TTGGCTAAAAAGACAAAGAAAACAGAAGCTATCACTAAAAAATTTGGTGATGAGCGTAAAAAGGCACTTGATGATGCCTT
GAAATTAATTGAAAAAGATTTCGGTAAGGGAGCTGTTATGCGCCTTGGTGAACGTGCTGAACAAAAAGTTCAAGTCATGA
GTTCAGGTAGCTTGGCTCTTGATATTGCTTTGGGTGCAGGTGGTTACCCTAAAGGGCGTATCATTGAAATTTATGGACCT
GAAAGTTCTGGTAAGACAACTGTTGCGCTTCATGCAGTAGCACAAGCTCAAAAAGAAGGTGGAATTGCTGCCTTTATCGA
TGCCGAACACGCACTTGACCCAGCTTATGCTGCGGCTCTTGGTGTTAACATTGATGAGCTTCTCTTGTCACAACCTGACT
CTGGGGAACAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCTGTTGACCTCGTCGTTGTCGATTCCGTTGCT
GCCCTTGTACCTCGTGCCGAAATCGATGGTGACATTGGTGATAATCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
AATGCGTAAGTTGTCAGCTTCAATTAATAAAACAAAAACAATTGCTATTTTCATCAACCAATTGCGCGAAAAAGTTGGTG
TGATGTTTGGTAACCCAGAAACAACACCTGGTGGACGCGCGCTTAAGTTCTATGCGTCAGTTCGTCTTGATGTTCGTGGT
AACACACAAATCAAAGGTTCTGGTGACCAAAAAGATAGCAATATCGGTAAAGAAACTAAAATCAAAGTGGTTAAAAACAA
AGTTGCGCCACCATTTAAAACAGCTGAAGTTGAAATTATGTATGGTGAAGGAATTTCACGTACGGGTGAGCTTGTTAAGA
TTGCTAGCGACCTAGACATCATCAAAAAAGCAGGTGCTTGGTTCTCGTATAACGGTGAGAAAATCGGACAAGGTTCTGAA
AATGCGAAGAAATATTTGGCAGAGCACCCAGAAGTCTTTGATGAAATCGACCACAAAGTACGTGTTCACTACGGTCTCGT
AGAAGAAACCGAATATGAAGAAGCTGCAGATGTTGTTGAAGAATCAGCAGCAACTAATGATAATGTTGACGAAGTTGTTC
TTGATTTAGATGATGCTATCGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.323

100

0.893
  recA Streptococcus mutans UA159

87.792

100

0.88
  recA Streptococcus mitis NCTC 12261

86.458

100

0.865
  recA Streptococcus mitis SK321

86.458

100

0.865
  recA Streptococcus pneumoniae TIGR4

85.309

100

0.862
  recA Streptococcus pneumoniae Rx1

85.309

100

0.862
  recA Streptococcus pneumoniae D39

85.309

100

0.862
  recA Streptococcus pneumoniae R6

85.309

100

0.862
  recA Lactococcus lactis subsp. cremoris KW2

79.143

91.146

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

66.849

95.052

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

85.677

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.062

88.281

0.539
  recA Glaesserella parasuis strain SC1401

60.588

88.542

0.536
  recA Acinetobacter baylyi ADP1

59.42

89.844

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.467

84.115

0.534
  recA Vibrio cholerae strain A1552

57.627

92.188

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.627

92.188

0.531
  recA Neisseria gonorrhoeae strain FA1090

61.631

86.198

0.531
  recA Neisseria gonorrhoeae MS11

61.631

86.198

0.531
  recA Neisseria gonorrhoeae MS11

61.631

86.198

0.531
  recA Acinetobacter baumannii D1279779

61.963

84.896

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

86.198

0.51
  recA Helicobacter pylori strain NCTC11637

58.084

86.979

0.505
  recA Helicobacter pylori 26695

58.084

86.979

0.505
  recA Pseudomonas stutzeri DSM 10701

59.385

84.635

0.503
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.552

0.492

Multiple sequence alignment