Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACN6MW_RS28680 Genome accession   NZ_CP183886
Coordinates   6472290..6473339 (+) Length   349 a.a.
NCBI ID   WP_364140323.1    Uniprot ID   -
Organism   Candidatus Pristimantibacillus sp. PTI5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6467290..6478339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MW_RS28655 (ACN6MW_28655) - 6467542..6468309 (+) 768 WP_419873159.1 DUF3388 domain-containing protein -
  ACN6MW_RS28660 (ACN6MW_28660) - 6468328..6469245 (+) 918 WP_419873160.1 RodZ domain-containing protein -
  ACN6MW_RS28665 (ACN6MW_28665) - 6469274..6469768 (+) 495 WP_308994498.1 YajQ family cyclic di-GMP-binding protein -
  ACN6MW_RS28670 (ACN6MW_28670) pgsA 6470064..6470639 (+) 576 WP_169083019.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6MW_RS28675 (ACN6MW_28675) cinA 6470730..6471980 (+) 1251 WP_419873161.1 competence/damage-inducible protein A Machinery gene
  ACN6MW_RS28680 (ACN6MW_28680) recA 6472290..6473339 (+) 1050 WP_364140323.1 recombinase RecA Machinery gene
  ACN6MW_RS28685 (ACN6MW_28685) - 6473419..6474123 (+) 705 WP_419873162.1 regulatory protein RecX -
  ACN6MW_RS28690 (ACN6MW_28690) rny 6474305..6475849 (+) 1545 WP_364140319.1 ribonuclease Y -
  ACN6MW_RS28695 (ACN6MW_28695) - 6475940..6476734 (+) 795 WP_419873163.1 TIGR00282 family metallophosphoesterase -
  ACN6MW_RS28700 (ACN6MW_28700) - 6476872..6477132 (+) 261 WP_006036664.1 stage V sporulation protein S -
  ACN6MW_RS28705 (ACN6MW_28705) - 6477246..6478187 (+) 942 WP_419873164.1 dipeptidase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37856.11 Da        Isoelectric Point: 4.9866

>NTDB_id=1106806 ACN6MW_RS28680 WP_364140323.1 6472290..6473339(+) (recA) [Candidatus Pristimantibacillus sp. PTI5]
MSDRRAALEMALRQIEKQFGKGSIMKLGESTHMQVETVPSGSLALDIALGIGGLPRGRVIEIYGPESSGKTTVALHAIAE
VQRIGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIETLKQGNDMIGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGTLVDIGVEMDIVQKSGAWFSYNGERLGQGRENAKQYLKDHKDVAEVIEKQ
IRDASNLSAAATQANFKPDEDDEEFEDLE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1106806 ACN6MW_RS28680 WP_364140323.1 6472290..6473339(+) (recA) [Candidatus Pristimantibacillus sp. PTI5]
TTGTCGGATCGTCGCGCTGCACTAGAAATGGCTTTGCGTCAAATTGAGAAGCAATTTGGTAAAGGCTCCATCATGAAATT
GGGAGAATCCACACACATGCAGGTAGAAACCGTGCCTAGCGGTTCACTTGCTCTAGATATTGCATTAGGAATAGGCGGCT
TGCCGCGTGGACGTGTTATTGAAATATATGGACCGGAATCATCCGGTAAAACGACTGTTGCGCTTCATGCGATTGCAGAG
GTTCAACGAATTGGCGGACAAGCTGCCTTTATCGATGCGGAGCATGCACTGGATCCGCTTTATGCCAGTAAGCTTGGCGT
AAACATTGATGAGCTGTTGCTTTCTCAGCCGGATACTGGCGAGCAAGCATTGGAAATTGCTGAAGCGCTTGTACGCAGCG
GCGCGGTTGACATTGTCGTTATTGACTCTGTTGCTGCACTTGTACCAAAAGCGGAGATCGAAGGCGACATGGGTGATTCA
CACGTTGGTCTTCAAGCTCGTTTGATGTCGCAGGCTTTGCGAAAGCTTTCGGGTGCAATCAGCAAATCGAAGACGATTGC
TATTTTCATCAACCAATTGCGTGAGAAAGTTGGCGTTATGTTTGGTAACCCTGAGACAACGCCAGGCGGACGCGCTTTGA
AGTTCTACTCGAGCGTACGTCTTGACGTGCGTCGTATCGAGACGCTGAAGCAAGGTAATGACATGATTGGTAACCGTACT
CGTATTAAAGTCGTGAAAAACAAGGTAGCACCTCCGTTTAAGCAAGCTGAGGTGGACATCATGTACGGCGAGGGTATTTC
CAGAGAAGGTACTCTTGTGGATATCGGCGTAGAGATGGATATCGTTCAGAAGAGCGGAGCATGGTTCTCATACAATGGCG
AGCGTCTAGGCCAAGGCCGAGAGAATGCGAAGCAGTACTTGAAGGATCACAAGGATGTTGCAGAGGTTATCGAGAAGCAA
ATTCGCGATGCGAGTAACTTGTCGGCAGCTGCGACTCAGGCAAATTTCAAACCTGATGAAGACGACGAAGAGTTCGAAGA
TCTGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.486

93.696

0.782
  recA Latilactobacillus sakei subsp. sakei 23K

71.51

100

0.719
  recA Streptococcus pyogenes NZ131

71.296

92.837

0.662
  recA Streptococcus mitis SK321

67.055

98.281

0.659
  recA Streptococcus mitis NCTC 12261

66.764

98.281

0.656
  recA Lactococcus lactis subsp. cremoris KW2

69.091

94.556

0.653
  recA Streptococcus pneumoniae Rx1

68.485

94.556

0.648
  recA Streptococcus pneumoniae D39

68.485

94.556

0.648
  recA Streptococcus pneumoniae R6

68.485

94.556

0.648
  recA Streptococcus pneumoniae TIGR4

68.485

94.556

0.648
  recA Streptococcus mutans UA159

69.136

92.837

0.642
  recA Glaesserella parasuis strain SC1401

62.04

100

0.628
  recA Neisseria gonorrhoeae MS11

62.974

98.281

0.619
  recA Neisseria gonorrhoeae MS11

62.974

98.281

0.619
  recA Neisseria gonorrhoeae strain FA1090

62.974

98.281

0.619
  recA Acinetobacter baumannii D1279779

61.85

99.14

0.613
  recA Acinetobacter baylyi ADP1

61.143

100

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

97.994

0.607
  recA Vibrio cholerae strain A1552

65.732

91.977

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

91.977

0.605
  recA Helicobacter pylori strain NCTC11637

60.29

98.854

0.596
  recA Helicobacter pylori 26695

60.29

98.854

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

93.696

0.593
  recA Ralstonia pseudosolanacearum GMI1000

66.667

88.539

0.59
  recA Pseudomonas stutzeri DSM 10701

61.261

95.415

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.422

92.264

0.576

Multiple sequence alignment