Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACN6MW_RS28675 Genome accession   NZ_CP183886
Coordinates   6470730..6471980 (+) Length   416 a.a.
NCBI ID   WP_419873161.1    Uniprot ID   -
Organism   Candidatus Pristimantibacillus sp. PTI5     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6465730..6476980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MW_RS28645 (ACN6MW_28645) ymfI 6466250..6466996 (+) 747 WP_419873158.1 elongation factor P 5-aminopentanone reductase -
  ACN6MW_RS28650 (ACN6MW_28650) - 6467103..6467354 (+) 252 WP_364140331.1 DUF3243 domain-containing protein -
  ACN6MW_RS28655 (ACN6MW_28655) - 6467542..6468309 (+) 768 WP_419873159.1 DUF3388 domain-containing protein -
  ACN6MW_RS28660 (ACN6MW_28660) - 6468328..6469245 (+) 918 WP_419873160.1 RodZ domain-containing protein -
  ACN6MW_RS28665 (ACN6MW_28665) - 6469274..6469768 (+) 495 WP_308994498.1 YajQ family cyclic di-GMP-binding protein -
  ACN6MW_RS28670 (ACN6MW_28670) pgsA 6470064..6470639 (+) 576 WP_169083019.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6MW_RS28675 (ACN6MW_28675) cinA 6470730..6471980 (+) 1251 WP_419873161.1 competence/damage-inducible protein A Machinery gene
  ACN6MW_RS28680 (ACN6MW_28680) recA 6472290..6473339 (+) 1050 WP_364140323.1 recombinase RecA Machinery gene
  ACN6MW_RS28685 (ACN6MW_28685) - 6473419..6474123 (+) 705 WP_419873162.1 regulatory protein RecX -
  ACN6MW_RS28690 (ACN6MW_28690) rny 6474305..6475849 (+) 1545 WP_364140319.1 ribonuclease Y -
  ACN6MW_RS28695 (ACN6MW_28695) - 6475940..6476734 (+) 795 WP_419873163.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44585.05 Da        Isoelectric Point: 4.7348

>NTDB_id=1106805 ACN6MW_RS28675 WP_419873161.1 6470730..6471980(+) (cinA) [Candidatus Pristimantibacillus sp. PTI5]
MKAEIIAVGTELLLGQIVNTNAQFLSQKLAGLGVDVYFQTVVGDNAGRLREAIEIGRSRADLLVFTGGLGPTQDDLTKDV
LAEYLNRKLVIHEPSMVQIEQMFSSRGIHMVESNRRQALMIEGGDPLENTTGLAVGNGLSVDGTLYLLLPGPPREMKPMM
DAAGELWLRSKLGDAEPLYSRILKFAGIGESNLEAKLIDLIDGQVDPTIAPYAKEGEVSIRVSTKAGSAIDADLKIDESV
DKIKERVGEYLYAQEDIPLEVEVVHLLRASRRKLASAESCSGGLLAELITNVPGSSGEYVGGVVTYTNIMKHHLLSIPLT
QLEGEGAPGAISDSTAALMAERVRELSDADFGVSLTGVAGPAESEGKPVGLVYIGISERGKATDVFTLNLSGGRSMIRLR
AVKAALYRLWQALQSN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1106805 ACN6MW_RS28675 WP_419873161.1 6470730..6471980(+) (cinA) [Candidatus Pristimantibacillus sp. PTI5]
ATGAAAGCAGAAATCATAGCGGTCGGTACGGAGCTGCTGCTCGGCCAAATCGTAAATACGAATGCGCAGTTTTTATCTCA
GAAGCTTGCGGGTCTAGGCGTAGACGTTTATTTTCAAACGGTTGTCGGCGACAATGCGGGGAGGCTGCGGGAAGCGATTG
AAATTGGGCGAAGCCGAGCGGATTTACTTGTTTTTACGGGCGGGCTCGGACCAACCCAGGACGATCTTACGAAGGATGTT
TTAGCGGAATATTTAAATCGCAAACTCGTTATCCATGAGCCGTCTATGGTTCAGATCGAGCAGATGTTCAGCTCTCGCGG
CATCCATATGGTGGAGAGCAACCGCCGTCAGGCCTTGATGATCGAGGGCGGCGACCCGCTAGAGAATACGACGGGCTTAG
CGGTTGGAAACGGCTTATCCGTGGATGGGACGCTTTATTTGCTGCTTCCCGGCCCGCCGCGTGAGATGAAGCCCATGATG
GATGCGGCAGGGGAGTTGTGGCTGCGTTCCAAGCTGGGAGATGCAGAGCCGCTGTATTCGCGTATTTTAAAGTTCGCAGG
CATTGGAGAATCGAATCTCGAGGCCAAGCTGATTGATTTAATTGACGGACAGGTCGATCCAACTATCGCGCCTTACGCGA
AGGAAGGCGAAGTTTCCATAAGAGTCTCGACTAAAGCTGGCTCGGCTATCGATGCCGATCTGAAAATAGATGAAAGCGTC
GATAAAATAAAAGAACGGGTAGGCGAATATTTGTATGCGCAGGAGGACATTCCGCTGGAGGTTGAGGTTGTACACCTCCT
GAGAGCCTCAAGACGCAAGCTGGCGAGCGCTGAAAGCTGCAGCGGGGGTTTATTGGCCGAGCTTATTACAAACGTTCCTG
GGAGCAGCGGAGAGTATGTAGGAGGGGTTGTCACCTATACCAATATAATGAAGCATCATTTATTAAGCATACCGCTCACG
CAGCTCGAAGGCGAAGGCGCACCAGGTGCAATCAGTGACTCGACTGCCGCTTTAATGGCGGAGAGGGTAAGGGAGCTCTC
GGATGCCGATTTCGGGGTATCCTTGACAGGCGTCGCCGGACCGGCTGAATCCGAGGGCAAACCCGTCGGGCTGGTTTACA
TTGGCATTTCGGAGCGGGGAAAAGCAACCGACGTTTTTACTTTGAACCTAAGCGGCGGAAGAAGCATGATAAGGCTGCGC
GCTGTGAAAGCTGCTTTGTACCGATTATGGCAGGCGCTTCAGTCGAATTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-162)

Competence-damaged protein (CinA)

(259-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

47.073

100

0.483
  cinA Streptococcus pneumoniae Rx1

46.838

100

0.481
  cinA Streptococcus pneumoniae R6

46.838

100

0.481
  cinA Streptococcus pneumoniae D39

46.604

100

0.478
  cinA Streptococcus mitis NCTC 12261

46.136

100

0.474
  cinA Streptococcus mitis SK321

46.136

100

0.474
  cinA Streptococcus mutans UA159

46.429

100

0.469
  cinA Bacillus subtilis subsp. subtilis str. 168

43.341

99.279

0.43
  cinA Streptococcus suis isolate S10

42.494

94.471

0.401

Multiple sequence alignment