Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACN6MU_RS03345 Genome accession   NZ_CP183885
Coordinates   725702..726739 (+) Length   345 a.a.
NCBI ID   WP_419958775.1    Uniprot ID   -
Organism   Psychrobacillus psychrotolerans strain BC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 720702..731739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MU_RS03320 (ACN6MU_03320) ymfI 720998..721729 (+) 732 WP_340830073.1 elongation factor P 5-aminopentanone reductase -
  ACN6MU_RS03325 (ACN6MU_03325) - 721886..722692 (+) 807 WP_419958221.1 DUF3388 domain-containing protein -
  ACN6MU_RS03330 (ACN6MU_03330) - 722709..723587 (+) 879 WP_419958222.1 helix-turn-helix domain-containing protein -
  ACN6MU_RS03335 (ACN6MU_03335) pgsA 723643..724221 (+) 579 WP_093535721.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6MU_RS03340 (ACN6MU_03340) cinA 724236..725492 (+) 1257 WP_340830076.1 competence/damage-inducible protein A Machinery gene
  ACN6MU_RS03345 (ACN6MU_03345) recA 725702..726739 (+) 1038 WP_419958775.1 recombinase RecA Machinery gene
  ACN6MU_RS03350 (ACN6MU_03350) rny 727187..728743 (+) 1557 WP_093535027.1 ribonuclease Y -
  ACN6MU_RS03355 (ACN6MU_03355) - 728834..729631 (+) 798 WP_093535717.1 TIGR00282 family metallophosphoesterase -
  ACN6MU_RS03360 (ACN6MU_03360) - 729717..729983 (+) 267 WP_093535025.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37293.40 Da        Isoelectric Point: 4.7867

>NTDB_id=1106745 ACN6MU_RS03345 WP_419958775.1 725702..726739(+) (recA) [Psychrobacillus psychrotolerans strain BC2]
MALKQIEKQFGKGSVMRLGEKTNLEISTSSSGSLALDAALGIGGYPRGRIIEIYGPESSGKTTVALHAIAEIQKTGGQAA
FIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIEILVIDSVAALVPKAEIEGEMGDSHMGLQARLM
SQALRKLSGVISKSNTIAIFINQVREKIGVMFGNPETTTGGRALKFYSSVRLEVRRAEAIKHGTDIMGNKTKIKVVKNKV
APPFRTAEVDIMYGEGISQEGEVVDIGSEYDIIQKSGSWYAYNEERIGQGRENAKQYLKENPSIKAEITGKIRESLGMAA
GSLTIGAHDIEEDEDEEFELLLEDK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1106745 ACN6MU_RS03345 WP_419958775.1 725702..726739(+) (recA) [Psychrobacillus psychrotolerans strain BC2]
ATGGCGTTAAAACAAATAGAGAAACAATTCGGTAAAGGTTCTGTTATGAGATTAGGAGAAAAGACAAATCTTGAAATTTC
TACTTCTTCAAGTGGTTCTTTAGCATTGGATGCTGCATTAGGAATAGGTGGATATCCAAGAGGACGTATTATTGAAATAT
ACGGCCCAGAGAGTTCAGGTAAAACTACAGTAGCACTGCACGCAATTGCAGAAATACAAAAAACTGGTGGGCAAGCTGCA
TTCATCGATGCTGAGCATGCATTAGATCCAGTTTACGCACAAAAACTAGGTGTAAATATTGATGAATTACTTTTATCTCA
ACCGGATACAGGGGAGCAGGCACTTGAAATTGCAGAAGCACTAGTACGTAGTGGTGCAATTGAAATACTAGTAATTGACT
CTGTAGCAGCTTTAGTACCTAAAGCTGAAATTGAAGGAGAGATGGGAGATTCTCATATGGGTCTTCAAGCTCGATTAATG
TCTCAAGCATTACGTAAACTTTCTGGTGTTATTAGTAAATCGAACACAATCGCTATTTTCATCAACCAAGTTCGTGAAAA
AATTGGAGTAATGTTCGGAAATCCGGAAACTACAACAGGTGGTCGTGCGCTTAAATTCTATAGTTCTGTGCGTTTAGAAG
TAAGACGGGCAGAAGCAATCAAGCATGGTACAGATATTATGGGTAATAAAACAAAAATTAAAGTAGTGAAGAACAAAGTT
GCTCCACCATTTAGAACTGCGGAAGTAGATATTATGTATGGTGAAGGAATTTCTCAAGAAGGAGAAGTAGTTGATATTGG
TTCTGAGTATGACATTATTCAAAAGAGTGGTTCTTGGTATGCATACAATGAGGAACGTATAGGACAAGGTAGAGAAAATG
CAAAACAATATTTAAAAGAGAATCCTTCTATTAAAGCAGAAATCACTGGTAAAATCCGTGAATCTCTTGGAATGGCAGCA
GGCTCTTTAACGATTGGTGCACATGACATTGAAGAGGACGAAGACGAAGAATTTGAATTATTATTAGAGGATAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.648

92.174

0.771
  recA Latilactobacillus sakei subsp. sakei 23K

70.554

99.42

0.701
  recA Streptococcus pyogenes NZ131

65.418

100

0.658
  recA Streptococcus pneumoniae TIGR4

66.372

98.261

0.652
  recA Streptococcus pneumoniae Rx1

66.372

98.261

0.652
  recA Streptococcus pneumoniae D39

66.372

98.261

0.652
  recA Streptococcus pneumoniae R6

66.372

98.261

0.652
  recA Streptococcus mutans UA159

66.176

98.551

0.652
  recA Streptococcus mitis NCTC 12261

68.21

93.913

0.641
  recA Streptococcus mitis SK321

68.21

93.913

0.641
  recA Acinetobacter baumannii D1279779

64.431

99.42

0.641
  recA Acinetobacter baylyi ADP1

64.793

97.971

0.635
  recA Lactococcus lactis subsp. cremoris KW2

68.224

93.043

0.635
  recA Ralstonia pseudosolanacearum GMI1000

64.742

95.362

0.617
  recA Glaesserella parasuis strain SC1401

62.832

98.261

0.617
  recA Neisseria gonorrhoeae MS11

67.949

90.435

0.614
  recA Neisseria gonorrhoeae strain FA1090

67.949

90.435

0.614
  recA Neisseria gonorrhoeae MS11

67.949

90.435

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

98.551

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.349

91.304

0.606
  recA Vibrio cholerae strain A1552

66.349

91.304

0.606
  recA Helicobacter pylori strain NCTC11637

64.78

92.174

0.597
  recA Helicobacter pylori 26695

64.465

92.174

0.594
  recA Pseudomonas stutzeri DSM 10701

64.762

91.304

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.125

92.754

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.782

90.435

0.577

Multiple sequence alignment