Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACN6MU_RS03340 Genome accession   NZ_CP183885
Coordinates   724236..725492 (+) Length   418 a.a.
NCBI ID   WP_340830076.1    Uniprot ID   -
Organism   Psychrobacillus psychrotolerans strain BC2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 719236..730492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MU_RS03315 (ACN6MU_03315) yfmH 719704..721005 (+) 1302 WP_340761960.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACN6MU_RS03320 (ACN6MU_03320) ymfI 720998..721729 (+) 732 WP_340830073.1 elongation factor P 5-aminopentanone reductase -
  ACN6MU_RS03325 (ACN6MU_03325) - 721886..722692 (+) 807 WP_419958221.1 DUF3388 domain-containing protein -
  ACN6MU_RS03330 (ACN6MU_03330) - 722709..723587 (+) 879 WP_419958222.1 helix-turn-helix domain-containing protein -
  ACN6MU_RS03335 (ACN6MU_03335) pgsA 723643..724221 (+) 579 WP_093535721.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6MU_RS03340 (ACN6MU_03340) cinA 724236..725492 (+) 1257 WP_340830076.1 competence/damage-inducible protein A Machinery gene
  ACN6MU_RS03345 (ACN6MU_03345) recA 725702..726739 (+) 1038 WP_419958775.1 recombinase RecA Machinery gene
  ACN6MU_RS03350 (ACN6MU_03350) rny 727187..728743 (+) 1557 WP_093535027.1 ribonuclease Y -
  ACN6MU_RS03355 (ACN6MU_03355) - 728834..729631 (+) 798 WP_093535717.1 TIGR00282 family metallophosphoesterase -
  ACN6MU_RS03360 (ACN6MU_03360) - 729717..729983 (+) 267 WP_093535025.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45831.70 Da        Isoelectric Point: 4.7952

>NTDB_id=1106744 ACN6MU_RS03340 WP_340830076.1 724236..725492(+) (cinA) [Psychrobacillus psychrotolerans strain BC2]
MKAEIIAVGSELLLGQISNTNARFISTQLAEIGLDVYYHTVVGDNADRLVESIQIAEKRADLIIFTGGLGPTKDDLTKET
IAKHLGMNLVLDNHAIMYIEDFFKRMGRNMTENNKKQALVLEGSTVLENKHGMAPGMLLTTDSHSYMLLPGPPKEMEPMF
QFEAKPLLPKLLLDENVIMSHVIRFYGIGEAELETEVQDLLDNQTNPTLAPLASDGEVTLRLTAKSNSEDEAWKKIEALQ
AEILNRVGKFVYGYNNDSLPSKLREILIENDLTISAAESMTAGLFQSELAAVPGMGEALVGGMITYTEDVKINQLGVDAA
IIEKYSVVSSECAEQMALKVKEKFQTDIGVGITGAAGPDGHGGQPAGTIWIGIALGDSKPVTYKLNLSGLRNTNRIRTVK
FTIYYLIRLLREQTLSKI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1106744 ACN6MU_RS03340 WP_340830076.1 724236..725492(+) (cinA) [Psychrobacillus psychrotolerans strain BC2]
ATGAAAGCAGAAATTATTGCAGTAGGTTCTGAATTATTACTAGGTCAGATTTCTAATACAAATGCCCGCTTTATATCTAC
TCAGCTAGCAGAGATTGGGTTGGACGTATACTATCATACGGTAGTAGGAGACAATGCGGATAGGTTGGTAGAATCCATCC
AAATAGCAGAAAAACGTGCGGATTTAATCATATTCACAGGTGGGTTAGGTCCTACAAAAGATGATTTAACAAAAGAAACT
ATTGCCAAGCATTTGGGAATGAACTTAGTGCTAGATAATCATGCAATCATGTATATTGAGGATTTCTTTAAGCGTATGGG
TCGCAATATGACAGAAAACAACAAAAAACAAGCACTTGTTTTAGAAGGAAGCACCGTATTAGAAAACAAACATGGTATGG
CACCTGGTATGTTACTAACTACCGATAGTCATTCATATATGCTTCTTCCTGGTCCACCAAAAGAGATGGAGCCTATGTTC
CAATTTGAAGCGAAGCCACTATTACCGAAGCTTCTTTTAGATGAAAATGTTATTATGTCCCATGTTATTCGGTTCTATGG
AATAGGGGAAGCCGAGCTAGAAACAGAAGTCCAAGATCTCCTAGATAACCAAACAAATCCCACACTTGCACCCCTTGCTT
CTGATGGAGAGGTTACTCTTCGATTAACAGCAAAAAGTAATTCGGAGGATGAGGCTTGGAAAAAGATTGAAGCATTACAA
GCTGAAATTTTAAACAGAGTTGGTAAATTTGTTTATGGATATAATAATGACTCTTTACCTTCGAAACTTAGAGAAATACT
TATCGAAAATGACTTGACTATTTCAGCAGCTGAAAGCATGACAGCAGGACTTTTCCAATCAGAACTTGCTGCAGTGCCGG
GAATGGGAGAAGCATTGGTTGGTGGGATGATCACTTATACAGAAGACGTGAAGATAAACCAACTAGGTGTAGATGCTGCT
ATTATTGAGAAATATAGCGTTGTTTCAAGTGAATGTGCAGAGCAAATGGCACTTAAAGTAAAAGAAAAATTTCAAACCGA
TATAGGTGTAGGTATTACTGGAGCTGCTGGTCCTGATGGTCATGGAGGGCAACCTGCTGGCACGATTTGGATTGGAATTG
CATTAGGGGATTCGAAGCCAGTGACCTATAAGCTCAATCTTTCAGGTTTACGAAACACGAACAGAATTAGAACAGTGAAA
TTTACAATCTATTATCTAATAAGACTACTGCGTGAGCAAACATTATCGAAAATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.398

98.565

0.526
  cinA Streptococcus mitis SK321

45.412

100

0.462
  cinA Streptococcus mitis NCTC 12261

44.941

100

0.457
  cinA Streptococcus pneumoniae TIGR4

44.941

100

0.457
  cinA Streptococcus pneumoniae Rx1

44.706

100

0.455
  cinA Streptococcus pneumoniae R6

44.706

100

0.455
  cinA Streptococcus pneumoniae D39

44.471

100

0.452
  cinA Streptococcus mutans UA159

44.048

100

0.443

Multiple sequence alignment