Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACN6MT_RS24675 Genome accession   NZ_CP183883
Coordinates   5045933..5046973 (-) Length   346 a.a.
NCBI ID   WP_034676708.1    Uniprot ID   -
Organism   Neobacillus niacini strain BE6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5040933..5051973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MT_RS24655 (ACN6MT_24655) spoVS 5041028..5041288 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  ACN6MT_RS24660 (ACN6MT_24660) - 5041460..5042257 (-) 798 WP_034676704.1 TIGR00282 family metallophosphoesterase -
  ACN6MT_RS24665 (ACN6MT_24665) - 5042603..5043772 (+) 1170 WP_419888493.1 IS256 family transposase -
  ACN6MT_RS24670 (ACN6MT_24670) rny 5044060..5045619 (-) 1560 WP_034676706.1 ribonuclease Y -
  ACN6MT_RS24675 (ACN6MT_24675) recA 5045933..5046973 (-) 1041 WP_034676708.1 recombinase RecA Machinery gene
  ACN6MT_RS24680 (ACN6MT_24680) cinA 5047498..5048751 (-) 1254 WP_419956528.1 competence/damage-inducible protein A Machinery gene
  ACN6MT_RS24685 (ACN6MT_24685) pgsA 5048770..5049348 (-) 579 WP_034676712.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6MT_RS24690 (ACN6MT_24690) - 5049399..5050319 (-) 921 WP_419888494.1 RodZ domain-containing protein -
  ACN6MT_RS24695 (ACN6MT_24695) - 5050340..5051131 (-) 792 WP_034676716.1 DUF3388 domain-containing protein -
  ACN6MT_RS24700 (ACN6MT_24700) - 5051288..5051545 (-) 258 WP_034676717.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37525.78 Da        Isoelectric Point: 4.9964

>NTDB_id=1106722 ACN6MT_RS24675 WP_034676708.1 5045933..5046973(-) (recA) [Neobacillus niacini strain BE6]
MSDRKAALEMALKQIEKQFGKGSIMKMGEKTDTRILTSPSGSLAVDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAAGGQAAFIDAEHALDPAYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSKTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTIRVEVRRGEAIKQGTDVVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDIGSDLDIVQKSGSWYSYNEERIGQGRENAKTFLRENPSIRLEIQQK
IREHFGLDGEKIVTEADDDEQFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1106722 ACN6MT_RS24675 WP_034676708.1 5045933..5046973(-) (recA) [Neobacillus niacini strain BE6]
GTGAGTGATCGTAAAGCGGCTTTAGAAATGGCGCTAAAACAGATAGAAAAGCAATTTGGTAAAGGTTCCATCATGAAAAT
GGGCGAGAAGACGGACACAAGAATTTTAACAAGTCCAAGTGGCTCATTAGCAGTAGATGCAGCACTGGGTGTTGGCGGAT
ATCCTCGAGGAAGAATTATTGAAATTTACGGACCTGAAAGCTCTGGTAAAACAACTGTTGCCTTACATGCAATTGCAGAA
GTACAAGCTGCAGGCGGACAAGCAGCATTTATCGACGCTGAGCATGCCCTAGATCCAGCATATGCACAAAAACTAGGAGT
AAACATCGATGAGTTATTGTTATCCCAGCCTGATACAGGGGAACAAGCACTAGAAATCGCAGAAGCACTTGTACGAAGCG
GTGCAATTGATATTCTAGTAGTCGATTCCGTTGCAGCACTAGTTCCAAAAGCAGAAATTGAAGGAGAAATGGGAGATTCA
CACATGGGTCTTCAAGCCCGCTTAATGTCTCAAGCGCTCCGTAAACTTTCTGGTGTCATTAACAAATCGAAGACAATTGC
AATCTTTATCAACCAAGTTCGTGAAAAGATTGGCGTCATGTTTGGAAACCCTGAGACGACTCCTGGTGGTCGTGCGTTGA
AATTCTACTCTACAATCCGTGTTGAAGTACGTCGTGGAGAAGCTATTAAACAAGGCACTGACGTGGTTGGAAACAAAACC
AAGATTAAGGTTGTTAAAAATAAAGTTGCGCCTCCATTCCGTACTGCTGAAGTGGATATTATGTATGGGGAAGGAATTTC
TAAAGAGGGCGAGATCATTGATATTGGCTCTGACTTAGATATCGTTCAAAAGAGCGGTTCATGGTATTCATATAATGAGG
AAAGAATTGGTCAAGGCCGTGAAAATGCAAAGACTTTCTTAAGAGAAAATCCAAGTATTCGTCTTGAAATTCAGCAAAAG
ATTCGTGAACACTTCGGATTAGACGGGGAAAAAATAGTAACTGAAGCCGATGACGATGAGCAATTCGAATTAATAGACTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.186

96.243

0.829
  recA Latilactobacillus sakei subsp. sakei 23K

71.182

100

0.714
  recA Streptococcus pneumoniae D39

67.435

100

0.676
  recA Streptococcus pneumoniae Rx1

67.435

100

0.676
  recA Streptococcus pneumoniae R6

67.435

100

0.676
  recA Streptococcus pneumoniae TIGR4

67.435

100

0.676
  recA Streptococcus mitis SK321

67.442

99.422

0.671
  recA Streptococcus mitis NCTC 12261

67.638

99.133

0.671
  recA Streptococcus mutans UA159

68.085

95.087

0.647
  recA Streptococcus pyogenes NZ131

67.988

94.798

0.645
  recA Neisseria gonorrhoeae MS11

64.912

98.844

0.642
  recA Neisseria gonorrhoeae MS11

64.912

98.844

0.642
  recA Neisseria gonorrhoeae strain FA1090

64.912

98.844

0.642
  recA Ralstonia pseudosolanacearum GMI1000

65.443

94.509

0.618
  recA Vibrio cholerae strain A1552

61.449

99.711

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.449

99.711

0.613
  recA Lactococcus lactis subsp. cremoris KW2

64.242

95.376

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

95.087

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.472

97.977

0.592
  recA Helicobacter pylori strain NCTC11637

62.31

95.087

0.592
  recA Acinetobacter baylyi ADP1

62.577

94.22

0.59
  recA Helicobacter pylori 26695

62.006

95.087

0.59
  recA Acinetobacter baumannii D1279779

59.475

99.133

0.59
  recA Pseudomonas stutzeri DSM 10701

63.438

92.486

0.587
  recA Glaesserella parasuis strain SC1401

59.118

98.266

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

92.486

0.569

Multiple sequence alignment