Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACN6MT_RS24680 Genome accession   NZ_CP183883
Coordinates   5047498..5048751 (-) Length   417 a.a.
NCBI ID   WP_419956528.1    Uniprot ID   -
Organism   Neobacillus niacini strain BE6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 5042498..5053751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MT_RS24665 (ACN6MT_24665) - 5042603..5043772 (+) 1170 WP_419888493.1 IS256 family transposase -
  ACN6MT_RS24670 (ACN6MT_24670) rny 5044060..5045619 (-) 1560 WP_034676706.1 ribonuclease Y -
  ACN6MT_RS24675 (ACN6MT_24675) recA 5045933..5046973 (-) 1041 WP_034676708.1 recombinase RecA Machinery gene
  ACN6MT_RS24680 (ACN6MT_24680) cinA 5047498..5048751 (-) 1254 WP_419956528.1 competence/damage-inducible protein A Machinery gene
  ACN6MT_RS24685 (ACN6MT_24685) pgsA 5048770..5049348 (-) 579 WP_034676712.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6MT_RS24690 (ACN6MT_24690) - 5049399..5050319 (-) 921 WP_419888494.1 RodZ domain-containing protein -
  ACN6MT_RS24695 (ACN6MT_24695) - 5050340..5051131 (-) 792 WP_034676716.1 DUF3388 domain-containing protein -
  ACN6MT_RS24700 (ACN6MT_24700) - 5051288..5051545 (-) 258 WP_034676717.1 DUF3243 domain-containing protein -
  ACN6MT_RS24705 (ACN6MT_24705) ymfI 5051626..5052348 (-) 723 WP_419888495.1 elongation factor P 5-aminopentanone reductase -
  ACN6MT_RS24710 (ACN6MT_24710) yfmH 5052423..5053712 (-) 1290 WP_419888496.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45415.36 Da        Isoelectric Point: 6.5085

>NTDB_id=1106723 ACN6MT_RS24680 WP_419956528.1 5047498..5048751(-) (cinA) [Neobacillus niacini strain BE6]
MNAEIIAVGSELLLGQIVNSNARFISQQLAVLGINVFFHTVVGDNPDRLRSVIEIAENRSNLIIFTGGLGPTKDDLTKET
IARHLGKNLVMDQEALESIELYFKKGNRVMTENNKKQALVLEDSTILPNHHGMAPGMMVETGNRVYMLLPGPPKEMEPMF
LHFGAAALSKQVKTDEKIVSRVLRFFGIGEAALETEIIDLIEQQTNPTIAPLAADGECTLRLTAKHHDLQTAEAMLNEVE
GNIRSRVGQFLYGYNNTSIVSELMNILKERKLTISAAESLTGGLFQQELTSVPGVSSVLKGGVVCYTNEVKKNVLKVKPE
TIEKHGVVSKECAKELAENVAALVGADIGISFTGVAGPAELEGKPVGTVYIGISIRGKQTVVEKLELGGSREANRSRSVK
YGCYYLIKLLQESQKAN

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1106723 ACN6MT_RS24680 WP_419956528.1 5047498..5048751(-) (cinA) [Neobacillus niacini strain BE6]
ATGAATGCAGAAATTATTGCAGTTGGTTCTGAATTACTGCTGGGTCAAATCGTTAATAGTAATGCACGCTTTATTTCGCA
ACAACTCGCAGTACTCGGTATCAATGTCTTTTTTCATACGGTAGTTGGTGATAATCCTGACCGATTAAGGTCTGTAATTG
AAATTGCAGAAAACCGTTCAAATTTAATTATTTTTACCGGCGGTCTAGGACCGACAAAGGATGATTTAACGAAGGAAACG
ATTGCTCGGCATTTAGGGAAAAATCTAGTTATGGATCAAGAAGCATTAGAATCTATTGAACTTTATTTTAAAAAGGGAAA
TAGAGTAATGACTGAAAATAATAAAAAGCAGGCCCTTGTTTTAGAAGATTCTACTATCCTGCCAAATCATCATGGGATGG
CACCAGGTATGATGGTAGAGACTGGTAATCGAGTATATATGCTTCTGCCAGGACCTCCGAAAGAAATGGAGCCTATGTTT
TTACACTTTGGTGCTGCAGCCTTGTCCAAACAAGTAAAAACGGATGAGAAAATCGTTTCTAGAGTTTTAAGGTTCTTTGG
TATTGGAGAGGCAGCGTTAGAAACGGAAATCATTGATTTAATAGAACAGCAAACAAATCCAACGATTGCCCCGCTTGCTG
CAGACGGAGAATGCACGTTAAGGCTTACGGCGAAGCACCATGACTTGCAAACAGCAGAGGCTATGCTTAATGAAGTAGAG
GGTAACATCAGATCTCGAGTTGGCCAGTTTTTATATGGCTATAACAATACTTCCATAGTATCTGAACTTATGAACATTTT
AAAAGAAAGAAAATTAACGATCTCAGCAGCAGAGAGCTTGACAGGCGGATTGTTTCAGCAGGAATTAACAAGTGTACCCG
GTGTTAGTTCGGTCCTAAAGGGCGGAGTGGTTTGCTACACGAATGAGGTTAAGAAGAATGTATTAAAAGTCAAACCAGAA
ACGATTGAAAAACATGGAGTTGTCAGTAAAGAGTGTGCAAAAGAGCTGGCTGAAAATGTTGCAGCATTAGTAGGTGCTGA
TATAGGGATTAGTTTCACGGGTGTCGCTGGTCCTGCTGAGCTTGAGGGTAAACCTGTAGGAACAGTTTACATTGGGATCT
CGATTAGAGGAAAACAAACAGTGGTTGAAAAGCTGGAACTAGGCGGTTCAAGAGAAGCAAACCGAAGCCGTTCCGTGAAA
TATGGCTGTTATTATTTAATAAAACTTTTGCAAGAATCACAGAAAGCTAATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.707

98.321

0.607
  cinA Streptococcus mutans UA159

46.552

97.362

0.453
  cinA Streptococcus pneumoniae TIGR4

46.898

96.643

0.453
  cinA Streptococcus pneumoniae Rx1

46.402

96.643

0.448
  cinA Streptococcus mitis SK321

46.402

96.643

0.448
  cinA Streptococcus pneumoniae R6

46.402

96.643

0.448
  cinA Streptococcus pneumoniae D39

46.154

96.643

0.446
  cinA Streptococcus mitis NCTC 12261

45.906

96.643

0.444

Multiple sequence alignment