Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACN6MY_RS10515 Genome accession   NZ_CP183879
Coordinates   2127845..2128888 (+) Length   347 a.a.
NCBI ID   WP_419883882.1    Uniprot ID   -
Organism   Peribacillus sp. B-H-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2122845..2133888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MY_RS10490 (ACN6MY_10490) - 2122901..2123161 (+) 261 WP_419883878.1 DUF3243 domain-containing protein -
  ACN6MY_RS10495 (ACN6MY_10495) - 2123558..2124349 (+) 792 WP_419883879.1 DUF3388 domain-containing protein -
  ACN6MY_RS10500 (ACN6MY_10500) - 2124358..2125257 (+) 900 WP_419883880.1 helix-turn-helix domain-containing protein -
  ACN6MY_RS10505 (ACN6MY_10505) pgsA 2125484..2126014 (+) 531 WP_419884136.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6MY_RS10510 (ACN6MY_10510) cinA 2126185..2127429 (+) 1245 WP_419883881.1 competence/damage-inducible protein A Machinery gene
  ACN6MY_RS10515 (ACN6MY_10515) recA 2127845..2128888 (+) 1044 WP_419883882.1 recombinase RecA Machinery gene
  ACN6MY_RS10520 (ACN6MY_10520) rny 2129302..2130861 (+) 1560 WP_071350694.1 ribonuclease Y -
  ACN6MY_RS10525 (ACN6MY_10525) - 2131009..2131806 (+) 798 WP_419883883.1 TIGR00282 family metallophosphoesterase -
  ACN6MY_RS10530 (ACN6MY_10530) spoVS 2132028..2132288 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  ACN6MY_RS10535 (ACN6MY_10535) - 2132340..2133296 (+) 957 WP_419883884.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37776.71 Da        Isoelectric Point: 4.8423

>NTDB_id=1106635 ACN6MY_RS10515 WP_419883882.1 2127845..2128888(+) (recA) [Peribacillus sp. B-H-3]
MGDRQAALEMALKQIEKQFGKGSIMKLGEQSDRRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPAYSQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQGLRKLSGAINKSNTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDVVGNKT
KIKVVKNKVAPPFRQAEVDIMYGEGISREGEIIDMGSDLDIVQKSGSWYSYNDERLGQGRENAKLFLKENKPLQQEVVKK
IRDHYSLDGEHFTEAEEDDQNGLELED

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1106635 ACN6MY_RS10515 WP_419883882.1 2127845..2128888(+) (recA) [Peribacillus sp. B-H-3]
GTGGGAGATCGTCAAGCGGCATTAGAAATGGCTTTAAAACAAATTGAAAAACAATTCGGCAAAGGTTCAATCATGAAATT
AGGAGAACAGTCAGACCGGAGAATATCCACTATATCCAGCGGCTCGCTTGCACTGGATGTAGCGCTCGGAGTTGGCGGTT
ATCCCCGCGGCCGAGTAATTGAAATCTATGGCCCGGAAAGTTCAGGTAAAACAACAGTTGCACTGCATGCTATTGCAGAA
GTACAGGCAAATGGGGGACAGGCAGCGTTCATTGATGCTGAACATGCTTTAGACCCGGCGTATTCCCAAAAATTAGGCGT
TAATATAGATGAGCTGCTGCTTTCCCAGCCGGATACCGGCGAGCAGGCATTGGAAATTGCAGAAGCACTAGTGCGAAGCG
GCGCTGTGGATATCATTGTTATTGACTCTGTTGCAGCCCTAGTTCCTAAAGCAGAGATTGAAGGAGAAATGGGAGACTCC
CATGTGGGTCTCCAGGCAAGATTGATGTCCCAGGGTCTAAGAAAGCTTTCTGGTGCGATAAACAAATCCAATACGATTGC
TATTTTCATAAACCAGATCCGTGAAAAAATCGGTGTGATGTTCGGAAATCCCGAAACGACTCCGGGGGGACGTGCTCTAA
AATTCTATTCCACAGTCCGTCTTGAAGTAAGACGTGCTGAACAGCTAAAACAGGGCAATGATGTAGTGGGAAATAAGACA
AAAATAAAAGTTGTAAAGAATAAGGTTGCCCCTCCATTCCGCCAGGCAGAAGTTGATATTATGTATGGTGAAGGTATTTC
CCGTGAAGGTGAAATCATTGATATGGGCTCTGATCTTGATATTGTACAAAAAAGCGGATCATGGTATTCATACAATGATG
AGCGTCTTGGCCAAGGACGAGAGAATGCAAAATTGTTCTTGAAAGAAAACAAGCCCCTTCAGCAGGAAGTTGTTAAGAAA
ATCAGGGATCATTATAGCCTCGATGGAGAACATTTTACTGAAGCAGAAGAAGATGACCAAAACGGATTAGAATTGGAAGA
TTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.89

94.524

0.821
  recA Latilactobacillus sakei subsp. sakei 23K

74.462

93.66

0.697
  recA Streptococcus pyogenes NZ131

63.158

100

0.657
  recA Streptococcus pneumoniae D39

66.181

98.847

0.654
  recA Streptococcus pneumoniae Rx1

66.181

98.847

0.654
  recA Streptococcus pneumoniae R6

66.181

98.847

0.654
  recA Streptococcus pneumoniae TIGR4

66.181

98.847

0.654
  recA Streptococcus mitis SK321

66.374

98.559

0.654
  recA Streptococcus mitis NCTC 12261

66.374

98.559

0.654
  recA Streptococcus mutans UA159

66.667

96.83

0.646
  recA Neisseria gonorrhoeae MS11

64.14

98.847

0.634
  recA Neisseria gonorrhoeae strain FA1090

64.14

98.847

0.634
  recA Neisseria gonorrhoeae MS11

64.14

98.847

0.634
  recA Lactococcus lactis subsp. cremoris KW2

65.046

94.813

0.617
  recA Ralstonia pseudosolanacearum GMI1000

68.371

90.202

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.537

97.695

0.611
  recA Vibrio cholerae strain A1552

65.109

92.507

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

92.507

0.602
  recA Helicobacter pylori strain NCTC11637

64.596

92.795

0.599
  recA Helicobacter pylori 26695

64.596

92.795

0.599
  recA Pseudomonas stutzeri DSM 10701

63.75

92.219

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Glaesserella parasuis strain SC1401

60.059

97.406

0.585
  recA Acinetobacter baumannii D1279779

59.467

97.406

0.579
  recA Acinetobacter baylyi ADP1

58.876

97.406

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.219

0.565

Multiple sequence alignment