Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACN6MY_RS10510 Genome accession   NZ_CP183879
Coordinates   2126185..2127429 (+) Length   414 a.a.
NCBI ID   WP_419883881.1    Uniprot ID   -
Organism   Peribacillus sp. B-H-3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2121185..2132429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MY_RS10485 (ACN6MY_10485) ymfI 2122094..2122819 (+) 726 WP_419883877.1 elongation factor P 5-aminopentanone reductase -
  ACN6MY_RS10490 (ACN6MY_10490) - 2122901..2123161 (+) 261 WP_419883878.1 DUF3243 domain-containing protein -
  ACN6MY_RS10495 (ACN6MY_10495) - 2123558..2124349 (+) 792 WP_419883879.1 DUF3388 domain-containing protein -
  ACN6MY_RS10500 (ACN6MY_10500) - 2124358..2125257 (+) 900 WP_419883880.1 helix-turn-helix domain-containing protein -
  ACN6MY_RS10505 (ACN6MY_10505) pgsA 2125484..2126014 (+) 531 WP_419884136.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6MY_RS10510 (ACN6MY_10510) cinA 2126185..2127429 (+) 1245 WP_419883881.1 competence/damage-inducible protein A Machinery gene
  ACN6MY_RS10515 (ACN6MY_10515) recA 2127845..2128888 (+) 1044 WP_419883882.1 recombinase RecA Machinery gene
  ACN6MY_RS10520 (ACN6MY_10520) rny 2129302..2130861 (+) 1560 WP_071350694.1 ribonuclease Y -
  ACN6MY_RS10525 (ACN6MY_10525) - 2131009..2131806 (+) 798 WP_419883883.1 TIGR00282 family metallophosphoesterase -
  ACN6MY_RS10530 (ACN6MY_10530) spoVS 2132028..2132288 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44896.87 Da        Isoelectric Point: 7.0472

>NTDB_id=1106634 ACN6MY_RS10510 WP_419883881.1 2126185..2127429(+) (cinA) [Peribacillus sp. B-H-3]
MDAEIIAVGSELLLGQIANTNGQFLSRQFAEMGINVFYHTVAGDNAGRLKSAIEAAEKRANLIVFTGGLGPTKDDLTKET
ISKHLGKKLVYDEAALASIKAYFQKTGREMTENNKKQALILEGSEVLPNDHGMAPGMVLDSNGKSYMLLPGPPKEMNPMF
VSYGHKSLMGKLDKHEIIESKVLRFFGIGEALLETRIADLLDGQGNPTIAPLASDGEVTLRITAKNESREKCAELIQQAE
KSIMERVGKYYYGEGDTSLIKELVKEMTARGLTIASAESLTGGMFQEQLTTIPGAGKIFKGGVVAYSTEVKEKVLKITPE
TISSHGVVSMECAGEMAVNIRTMMDADVGISFTGVAGPDEQEGKPVGTVFIGISIGDKKPIIERLNLSGSRAQIRMRSVK
YGCRFLIRRLKDLI

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1106634 ACN6MY_RS10510 WP_419883881.1 2126185..2127429(+) (cinA) [Peribacillus sp. B-H-3]
ATGGATGCAGAAATCATTGCAGTGGGATCTGAGCTGCTTTTAGGGCAAATCGCAAATACAAATGGGCAATTTCTATCCAG
GCAATTTGCAGAAATGGGAATCAACGTTTTTTACCATACTGTTGCAGGAGACAATGCCGGACGGCTGAAATCGGCTATTG
AAGCAGCAGAAAAAAGAGCAAACTTAATTGTTTTCACAGGAGGGCTGGGGCCGACAAAAGACGATTTGACAAAAGAAACA
ATTTCAAAGCATTTAGGGAAAAAACTTGTCTATGATGAGGCGGCATTAGCTTCCATTAAAGCCTATTTTCAAAAAACTGG
GCGTGAAATGACCGAAAATAATAAAAAGCAAGCACTCATACTAGAAGGCTCGGAGGTTTTGCCCAATGATCACGGCATGG
CGCCGGGAATGGTGCTGGATTCCAATGGGAAATCATATATGCTTCTCCCCGGACCCCCGAAAGAAATGAATCCAATGTTC
GTTTCATACGGCCATAAAAGCTTGATGGGCAAACTTGATAAACATGAAATTATTGAATCAAAGGTTCTTCGCTTTTTCGG
AATCGGTGAAGCTCTGCTTGAGACAAGAATTGCTGATTTACTGGATGGACAAGGCAATCCGACAATTGCGCCTCTTGCCT
CTGATGGAGAAGTTACATTAAGAATCACAGCTAAAAACGAATCCAGGGAAAAATGCGCTGAGCTAATCCAGCAGGCTGAA
AAGAGCATTATGGAACGGGTTGGCAAGTATTACTATGGCGAGGGAGATACCTCGCTTATTAAAGAGCTGGTTAAGGAAAT
GACTGCAAGAGGACTTACAATTGCATCAGCTGAAAGCCTTACTGGCGGCATGTTTCAGGAACAGCTTACAACCATTCCAG
GAGCAGGGAAAATTTTCAAGGGCGGTGTGGTTGCCTATTCAACAGAAGTGAAAGAGAAAGTGCTGAAGATCACTCCAGAA
ACCATTTCTTCACATGGAGTTGTCAGCATGGAATGCGCCGGGGAAATGGCCGTAAATATCAGGACGATGATGGATGCGGA
CGTGGGCATCAGCTTTACTGGTGTGGCTGGGCCTGACGAACAAGAAGGAAAGCCTGTTGGTACGGTTTTTATAGGAATTT
CAATTGGTGATAAGAAACCAATTATTGAACGGTTGAATCTTTCAGGCAGCCGGGCTCAGATCCGGATGAGAAGCGTGAAA
TATGGATGCCGCTTTCTGATTCGCCGTTTAAAAGATCTTATCTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.012

98.792

0.543
  cinA Streptococcus pneumoniae TIGR4

45.952

100

0.466
  cinA Streptococcus mitis SK321

45.476

100

0.461
  cinA Streptococcus pneumoniae R6

45.476

100

0.461
  cinA Streptococcus pneumoniae Rx1

45.476

100

0.461
  cinA Streptococcus mitis NCTC 12261

45.476

100

0.461
  cinA Streptococcus pneumoniae D39

45.238

100

0.459
  cinA Streptococcus mutans UA159

44.686

100

0.447
  cinA Streptococcus suis isolate S10

40.369

91.546

0.37

Multiple sequence alignment