Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACN6MX_RS05715 Genome accession   NZ_CP183878
Coordinates   1277898..1278971 (+) Length   357 a.a.
NCBI ID   WP_419961683.1    Uniprot ID   -
Organism   Psychrobacillus sp. BM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1272898..1283971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MX_RS05690 (ACN6MX_05690) ymfI 1273232..1273963 (+) 732 WP_419961679.1 elongation factor P 5-aminopentanone reductase -
  ACN6MX_RS05695 (ACN6MX_05695) - 1274134..1274940 (+) 807 WP_419961680.1 DUF3388 domain-containing protein -
  ACN6MX_RS05700 (ACN6MX_05700) - 1274957..1275814 (+) 858 WP_419961681.1 helix-turn-helix domain-containing protein -
  ACN6MX_RS05705 (ACN6MX_05705) pgsA 1275868..1276446 (+) 579 WP_419962565.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6MX_RS05710 (ACN6MX_05710) cinA 1276461..1277717 (+) 1257 WP_419961682.1 competence/damage-inducible protein A Machinery gene
  ACN6MX_RS05715 (ACN6MX_05715) recA 1277898..1278971 (+) 1074 WP_419961683.1 recombinase RecA Machinery gene
  ACN6MX_RS05720 (ACN6MX_05720) rny 1279982..1281538 (+) 1557 WP_419961684.1 ribonuclease Y -
  ACN6MX_RS05725 (ACN6MX_05725) - 1281632..1282429 (+) 798 WP_419962566.1 TIGR00282 family metallophosphoesterase -
  ACN6MX_RS05730 (ACN6MX_05730) - 1282515..1282781 (+) 267 WP_419961685.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38422.69 Da        Isoelectric Point: 4.6942

>NTDB_id=1106570 ACN6MX_RS05715 WP_419961683.1 1277898..1278971(+) (recA) [Psychrobacillus sp. BM2]
MANNDRQAALDMALKQIEKQFGKGSVMKLGEKTNLEISTSSSGSLALDAALGIGGYPRGRIIEIYGPESSGKTTVALHAI
AEIQKTGGTAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIEILVIDSVAALVPKAEIEGEMG
DSHMGLQARLMSQALRKLSGVISKSNTIAIFINQVREKIGVMFGNPETTTGGRALKFYSSVRLEVRRAEAIKQGTDIMGN
KTKIKVVKNKVAPPFKTAEVDIMYGEGISQEGEVVDIGSEFDIIQKSGSWYAYNEERIGQGRENAKQYLKENPSIKAEIT
GKIRESLGMAASALTIGGHEVEEEEDGELELLLEDEK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1106570 ACN6MX_RS05715 WP_419961683.1 1277898..1278971(+) (recA) [Psychrobacillus sp. BM2]
TTGGCTAATAATGATCGTCAAGCAGCATTAGATATGGCGTTAAAACAAATAGAGAAACAATTTGGCAAAGGTTCTGTTAT
GAAACTAGGAGAAAAAACAAATCTTGAAATTTCTACTTCTTCTAGTGGTTCATTAGCATTGGATGCAGCGCTAGGAATAG
GCGGATATCCAAGAGGACGTATTATTGAAATATACGGTCCAGAGAGTTCAGGTAAAACAACTGTTGCTCTACATGCCATT
GCAGAAATACAAAAAACTGGCGGTACAGCAGCGTTTATCGATGCCGAGCATGCGCTAGACCCAGTATATGCACAAAAACT
TGGTGTAAATATTGACGAATTACTTTTATCTCAACCAGATACAGGAGAACAAGCTCTTGAAATTGCAGAAGCACTTGTAC
GTAGTGGAGCAATTGAGATTTTAGTAATTGACTCGGTAGCTGCTTTAGTACCTAAAGCTGAAATTGAAGGAGAGATGGGA
GATTCTCATATGGGTCTTCAAGCTCGACTAATGTCTCAAGCATTACGTAAACTTTCAGGTGTTATTAGTAAGTCAAACAC
AATCGCCATTTTCATCAACCAAGTTCGTGAAAAAATTGGAGTAATGTTCGGAAATCCGGAAACTACAACAGGTGGTCGTG
CGCTTAAATTTTATAGTTCTGTCCGTTTAGAAGTAAGACGTGCAGAAGCGATCAAACAAGGCACCGATATTATGGGTAAC
AAAACGAAGATTAAAGTAGTGAAGAACAAAGTTGCTCCACCATTTAAAACTGCAGAAGTAGATATTATGTATGGTGAGGG
GATTTCTCAAGAAGGAGAAGTAGTTGACATAGGATCAGAGTTTGACATTATTCAAAAAAGTGGTTCTTGGTATGCGTACA
ATGAAGAGCGCATAGGTCAAGGTAGAGAAAATGCAAAACAATACTTAAAAGAAAATCCTTCTATTAAAGCAGAAATTACA
GGGAAAATCCGTGAATCACTTGGAATGGCAGCAAGCGCCTTAACGATCGGCGGTCATGAAGTTGAAGAGGAAGAAGACGG
AGAACTTGAATTATTATTAGAAGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.742

91.317

0.765
  recA Latilactobacillus sakei subsp. sakei 23K

70.141

99.44

0.697
  recA Streptococcus pyogenes NZ131

65.169

99.72

0.65
  recA Streptococcus mitis SK321

65.33

97.759

0.639
  recA Streptococcus pneumoniae Rx1

66.087

96.639

0.639
  recA Streptococcus pneumoniae TIGR4

66.087

96.639

0.639
  recA Streptococcus pneumoniae R6

66.087

96.639

0.639
  recA Streptococcus pneumoniae D39

66.087

96.639

0.639
  recA Streptococcus mitis NCTC 12261

65.517

97.479

0.639
  recA Streptococcus mutans UA159

67.879

92.437

0.627
  recA Neisseria gonorrhoeae MS11

64.183

97.759

0.627
  recA Neisseria gonorrhoeae MS11

64.183

97.759

0.627
  recA Neisseria gonorrhoeae strain FA1090

64.183

97.759

0.627
  recA Acinetobacter baumannii D1279779

63.352

98.599

0.625
  recA Lactococcus lactis subsp. cremoris KW2

67.477

92.157

0.622
  recA Acinetobacter baylyi ADP1

63.953

96.359

0.616
  recA Vibrio cholerae strain A1552

65.538

91.036

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.538

91.036

0.597
  recA Ralstonia pseudosolanacearum GMI1000

64.634

91.877

0.594
  recA Helicobacter pylori strain NCTC11637

61.337

96.359

0.591
  recA Helicobacter pylori 26695

61.047

96.359

0.588
  recA Pseudomonas stutzeri DSM 10701

60.519

97.199

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.58

96.639

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

92.717

0.585
  recA Glaesserella parasuis strain SC1401

64.596

90.196

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.75

89.636

0.571

Multiple sequence alignment