Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACN6MX_RS05710 Genome accession   NZ_CP183878
Coordinates   1276461..1277717 (+) Length   418 a.a.
NCBI ID   WP_419961682.1    Uniprot ID   -
Organism   Psychrobacillus sp. BM2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1271461..1282717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MX_RS05685 (ACN6MX_05685) yfmH 1271938..1273239 (+) 1302 WP_419961678.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACN6MX_RS05690 (ACN6MX_05690) ymfI 1273232..1273963 (+) 732 WP_419961679.1 elongation factor P 5-aminopentanone reductase -
  ACN6MX_RS05695 (ACN6MX_05695) - 1274134..1274940 (+) 807 WP_419961680.1 DUF3388 domain-containing protein -
  ACN6MX_RS05700 (ACN6MX_05700) - 1274957..1275814 (+) 858 WP_419961681.1 helix-turn-helix domain-containing protein -
  ACN6MX_RS05705 (ACN6MX_05705) pgsA 1275868..1276446 (+) 579 WP_419962565.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6MX_RS05710 (ACN6MX_05710) cinA 1276461..1277717 (+) 1257 WP_419961682.1 competence/damage-inducible protein A Machinery gene
  ACN6MX_RS05715 (ACN6MX_05715) recA 1277898..1278971 (+) 1074 WP_419961683.1 recombinase RecA Machinery gene
  ACN6MX_RS05720 (ACN6MX_05720) rny 1279982..1281538 (+) 1557 WP_419961684.1 ribonuclease Y -
  ACN6MX_RS05725 (ACN6MX_05725) - 1281632..1282429 (+) 798 WP_419962566.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45953.04 Da        Isoelectric Point: 5.1029

>NTDB_id=1106569 ACN6MX_RS05710 WP_419961682.1 1276461..1277717(+) (cinA) [Psychrobacillus sp. BM2]
MKAEIIAIGSELLLGQISNTNARFISTQLAEIGLDVYYHTVVGDNADRLLESIQIAEKRADLIIFTGGLGPTKDDLTKET
IAKHLGMNLVLDNHAIMYIEDFFKRMDRKMTENNKKQALVLEGCTVLENKHGMAPGMLLSTESHSYMLLPGPPKEMEPMF
QFEAKPLLPKLILDENVIMSHVIRFYGIGEAELETEVQDLLDNQTNPTLAPLASDGEVTLRITAKSNSEEEAWKKIEALQ
AEILNRVGKFVYGYNNDSLPSKLREILIENNLTISAAESMTAGLFQSELAAVPGMGEALVGGMITYSEDVKIKQLGVDAD
IIKKYTVVSSQCAEQMAIRVKEIFHTDIGVGITGAAGPDGHGGQPAGTVWIGIAIGETKSISYKLNLSGLRNTNRIRAVK
FTIYYLIRLIREQKLAGI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1106569 ACN6MX_RS05710 WP_419961682.1 1276461..1277717(+) (cinA) [Psychrobacillus sp. BM2]
ATGAAAGCAGAAATTATTGCAATAGGCTCTGAGTTATTACTAGGGCAGATTTCTAATACAAATGCCCGTTTTATATCCAC
TCAACTAGCGGAGATCGGTCTGGACGTATATTATCATACGGTAGTCGGAGATAATGCGGATAGGTTGTTAGAATCGATTC
AAATAGCAGAAAAACGAGCAGACCTTATTATTTTCACAGGAGGATTAGGACCTACAAAAGATGATTTAACGAAGGAAACT
ATAGCTAAGCATTTAGGTATGAACCTTGTGCTCGATAATCATGCAATTATGTATATTGAAGATTTCTTTAAGCGTATGGA
TCGTAAAATGACGGAAAACAACAAAAAACAAGCGCTCGTTTTAGAAGGTTGCACTGTACTGGAAAATAAACATGGAATGG
CACCTGGGATGTTACTTTCTACGGAAAGTCATTCATATATGCTACTTCCCGGGCCACCAAAAGAGATGGAGCCAATGTTC
CAATTCGAAGCGAAGCCATTGTTGCCTAAGCTTATTTTAGATGAAAATGTAATTATGTCCCATGTTATTCGTTTTTATGG
CATAGGCGAAGCAGAATTGGAAACAGAAGTGCAGGATCTACTAGATAACCAAACGAATCCTACACTTGCACCGCTTGCCT
CAGATGGTGAGGTTACCCTTCGAATAACGGCAAAAAGCAATTCGGAAGAAGAAGCTTGGAAAAAGATTGAAGCATTACAA
GCTGAAATACTCAACCGTGTTGGCAAATTTGTTTATGGTTATAATAATGACTCTTTGCCATCGAAGCTAAGAGAGATCCT
TATTGAAAATAATCTCACCATTTCAGCTGCAGAAAGCATGACTGCTGGACTTTTTCAATCGGAGCTTGCTGCAGTACCAG
GAATGGGAGAGGCTTTGGTAGGTGGAATGATAACCTATTCAGAAGACGTGAAGATTAAGCAATTAGGTGTCGATGCTGAT
ATTATCAAGAAATACACCGTAGTTTCTAGTCAATGTGCAGAGCAAATGGCAATTCGAGTAAAAGAAATATTTCACACCGA
TATAGGAGTAGGTATCACTGGTGCGGCTGGTCCTGATGGTCATGGGGGGCAACCGGCAGGTACAGTTTGGATTGGAATCG
CAATAGGTGAGACCAAGTCTATATCATATAAACTTAATCTTTCCGGTTTACGAAATACGAATAGAATTAGGGCAGTGAAG
TTTACTATCTATTACTTGATACGTTTAATACGAGAACAAAAATTAGCAGGAATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.542

98.804

0.519
  cinA Streptococcus mitis SK321

45.176

100

0.459
  cinA Streptococcus mitis NCTC 12261

44.706

100

0.455
  cinA Streptococcus pneumoniae TIGR4

44.235

100

0.45
  cinA Streptococcus pneumoniae Rx1

44

100

0.447
  cinA Streptococcus pneumoniae R6

44

100

0.447
  cinA Streptococcus pneumoniae D39

43.765

100

0.445
  cinA Streptococcus mutans UA159

42.857

100

0.431

Multiple sequence alignment