Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNQFN_RS03405 Genome accession   NZ_CP183038
Coordinates   701676..702716 (-) Length   346 a.a.
NCBI ID   WP_418647955.1    Uniprot ID   -
Organism   Thauera butanivorans strain TB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 696676..707716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNQFN_RS03375 (ACNQFN_03375) hprK 697036..697983 (-) 948 WP_068636246.1 HPr(Ser) kinase/phosphatase -
  ACNQFN_RS03380 (ACNQFN_03380) ptsN 697980..698441 (-) 462 WP_068636247.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACNQFN_RS03385 (ACNQFN_03385) hpf 698686..699012 (-) 327 WP_068636248.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACNQFN_RS03390 (ACNQFN_03390) rpoN/rpoN1 699030..700490 (-) 1461 WP_068636249.1 RNA polymerase factor sigma-54 Machinery gene
  ACNQFN_RS03395 (ACNQFN_03395) lptB 700497..701219 (-) 723 WP_068636250.1 LPS export ABC transporter ATP-binding protein -
  ACNQFN_RS03400 (ACNQFN_03400) recX 701206..701655 (-) 450 WP_068636251.1 recombination regulator RecX -
  ACNQFN_RS03405 (ACNQFN_03405) recA 701676..702716 (-) 1041 WP_418647955.1 recombinase RecA Machinery gene
  ACNQFN_RS03410 (ACNQFN_03410) - 702850..703347 (-) 498 WP_068636253.1 CinA family protein -
  ACNQFN_RS03415 (ACNQFN_03415) - 703384..703866 (-) 483 WP_068636254.1 phosphatidylglycerophosphatase A -
  ACNQFN_RS03420 (ACNQFN_03420) thiL 703931..704947 (-) 1017 WP_418647956.1 thiamine-phosphate kinase -
  ACNQFN_RS03425 (ACNQFN_03425) ubiT 705171..705704 (-) 534 WP_418647957.1 ubiquinone anaerobic biosynthesis accessory factor UbiT -
  ACNQFN_RS03430 (ACNQFN_03430) - 705771..706682 (-) 912 WP_068636257.1 U32 family peptidase -
  ACNQFN_RS03435 (ACNQFN_03435) ubiU 706697..707713 (-) 1017 WP_418648956.1 ubiquinone anaerobic biosynthesis protein UbiU -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36907.22 Da        Isoelectric Point: 5.3230

>NTDB_id=1103729 ACNQFN_RS03405 WP_418647955.1 701676..702716(-) (recA) [Thauera butanivorans strain TB]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNIEDLLISQPDTGEQALEIADMLVRSGGVDIVVVDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGTIKKGDEVVGS
ETRVKVVKNKVSPPFKEAHFDILYGEGISREGEIIDLGVVHKIVDKSGAWYSYNGDKIGQGKDNSREFLRNNPALAREIE
NKVRAAVSLPEMPSGGAAPAVAADEA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1103729 ACNQFN_RS03405 WP_418647955.1 701676..702716(-) (recA) [Thauera butanivorans strain TB]
ATGGACGACAACAAGGCCAAGGCACTCGCCGCCGCGCTCTCGCAGATCGAAAAGCAGTTCGGCAAGGGCTCGATCATGCG
CATGGGCGACGGCAACGTCGAGCGCGACATCCAGACCGTCTCCACCGGCTCGCTCGGCCTCGACATCGCACTCGGCCTCG
GCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGTCCTGAATCCTCCGGCAAGACCACGCTGACGCTGCAGGTCATC
GCCGAGATGCAGAAGCTCGGCGGTACCGCCGCCTTCATCGACGCCGAGCATGCGCTCGACGTCGGCTACGCCGAGAAGCT
CGGCGTCAATATCGAGGACCTGCTGATCTCGCAGCCCGACACCGGCGAACAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCGGGCGGCGTCGACATCGTCGTCGTCGACTCGGTCGCCGCGCTGACGCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGCGCACCAACAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCCCCGAGACCACCACCGGCGGCAACG
CGCTGAAGTTCTACGCCTCGGTGCGCATGGACATCCGCCGCACCGGCACGATCAAGAAGGGCGACGAGGTGGTCGGCTCC
GAGACCCGCGTCAAGGTCGTCAAGAACAAGGTCTCACCGCCGTTCAAGGAAGCGCACTTCGACATCCTGTACGGCGAAGG
CATCTCGCGCGAAGGCGAGATCATCGACCTCGGCGTGGTGCACAAGATCGTCGACAAGTCCGGCGCATGGTATTCCTACA
ACGGCGACAAGATCGGCCAGGGCAAGGACAACTCGCGCGAGTTCCTGCGCAACAACCCGGCGCTGGCACGCGAGATCGAG
AACAAGGTCCGTGCCGCCGTCAGCCTGCCCGAAATGCCGTCGGGCGGCGCAGCCCCGGCCGTCGCGGCGGACGAGGCCTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.965

91.618

0.76
  recA Vibrio cholerae strain A1552

71.014

99.711

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.014

99.711

0.708
  recA Pseudomonas stutzeri DSM 10701

75.077

93.931

0.705
  recA Neisseria gonorrhoeae strain FA1090

73.538

93.931

0.691
  recA Neisseria gonorrhoeae MS11

73.538

93.931

0.691
  recA Neisseria gonorrhoeae MS11

73.538

93.931

0.691
  recA Acinetobacter baylyi ADP1

73.148

93.642

0.685
  recA Acinetobacter baumannii D1279779

72.84

93.642

0.682
  recA Glaesserella parasuis strain SC1401

69.939

94.22

0.659
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.683

94.798

0.642
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.179

97.11

0.633
  recA Helicobacter pylori 26695

63.343

98.555

0.624
  recA Helicobacter pylori strain NCTC11637

63.343

98.555

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

95.087

0.619
  recA Latilactobacillus sakei subsp. sakei 23K

62.84

95.665

0.601
  recA Streptococcus pyogenes NZ131

59.366

100

0.595
  recA Streptococcus mutans UA159

60.661

96.243

0.584
  recA Streptococcus mitis SK321

60.79

95.087

0.578
  recA Streptococcus mitis NCTC 12261

60.79

95.087

0.578
  recA Streptococcus pneumoniae Rx1

60.79

95.087

0.578
  recA Streptococcus pneumoniae D39

60.79

95.087

0.578
  recA Streptococcus pneumoniae R6

60.79

95.087

0.578
  recA Streptococcus pneumoniae TIGR4

60.79

95.087

0.578
  recA Lactococcus lactis subsp. cremoris KW2

59.939

94.509

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

93.642

0.558

Multiple sequence alignment