Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACNQFN_RS03390 Genome accession   NZ_CP183038
Coordinates   699030..700490 (-) Length   486 a.a.
NCBI ID   WP_068636249.1    Uniprot ID   -
Organism   Thauera butanivorans strain TB     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 694030..705490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNQFN_RS03365 (ACNQFN_03365) - 694751..695377 (+) 627 WP_245650876.1 5-formyltetrahydrofolate cyclo-ligase -
  ACNQFN_RS03370 (ACNQFN_03370) ilvA 695418..696938 (-) 1521 WP_068636245.1 threonine ammonia-lyase, biosynthetic -
  ACNQFN_RS03375 (ACNQFN_03375) hprK 697036..697983 (-) 948 WP_068636246.1 HPr(Ser) kinase/phosphatase -
  ACNQFN_RS03380 (ACNQFN_03380) ptsN 697980..698441 (-) 462 WP_068636247.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACNQFN_RS03385 (ACNQFN_03385) hpf 698686..699012 (-) 327 WP_068636248.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACNQFN_RS03390 (ACNQFN_03390) rpoN/rpoN1 699030..700490 (-) 1461 WP_068636249.1 RNA polymerase factor sigma-54 Machinery gene
  ACNQFN_RS03395 (ACNQFN_03395) lptB 700497..701219 (-) 723 WP_068636250.1 LPS export ABC transporter ATP-binding protein -
  ACNQFN_RS03400 (ACNQFN_03400) recX 701206..701655 (-) 450 WP_068636251.1 recombination regulator RecX -
  ACNQFN_RS03405 (ACNQFN_03405) recA 701676..702716 (-) 1041 WP_418647955.1 recombinase RecA Machinery gene
  ACNQFN_RS03410 (ACNQFN_03410) - 702850..703347 (-) 498 WP_068636253.1 CinA family protein -
  ACNQFN_RS03415 (ACNQFN_03415) - 703384..703866 (-) 483 WP_068636254.1 phosphatidylglycerophosphatase A -
  ACNQFN_RS03420 (ACNQFN_03420) thiL 703931..704947 (-) 1017 WP_418647956.1 thiamine-phosphate kinase -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 54510.51 Da        Isoelectric Point: 4.7486

>NTDB_id=1103728 ACNQFN_RS03390 WP_068636249.1 699030..700490(-) (rpoN/rpoN1) [Thauera butanivorans strain TB]
MKPSLQLKLSQHLTLTPQLQQSIKLLQLSTIELNQEIERFLLENPMLEREEFDEPPPRLEPSTSSSPAEREREQQREADT
DGGGDGDNGGTAEREGGDEGIDWSNVGTGTSAKRDDDDDVDFQEIQAAELSLREHLDQQVALSPLNDLDRALVRFIIEAL
DDDGYLYQPLEELLELLPPELEIDLDDLSIALRHVQNLDPAGIGARTPQECLALQLRAMPESSIQMLALEIVDGHLELLA
ERNFVRLKKLTGCNDDELRAAHALICSLDPHPGLRHSASETRYVLPDVVVRKVRGRWSVSLNQEAMPRLRVNRLYASLLQ
QNRGQGGGLTGQLQEARWLIKNVQQRFDTILRVSQAIVDQQRQFFDHGDVAMRPLTLREIADQLELHESTVSRVTTQKYM
ATPRGVFELKYFFGSHVSTDTGGAASSTAIRALIRQLVDAEDRKKPLSDARIAEVLGQQGIVVARRTIAKYRESLNIPPV
SLRKSI

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=1103728 ACNQFN_RS03390 WP_068636249.1 699030..700490(-) (rpoN/rpoN1) [Thauera butanivorans strain TB]
ATGAAACCCAGTCTCCAGCTCAAGCTTTCCCAGCACCTCACGCTGACGCCGCAACTGCAGCAGTCGATCAAGCTGCTGCA
GTTGTCGACGATCGAGCTGAACCAGGAGATCGAGCGCTTCCTGCTCGAGAATCCGATGCTGGAGCGCGAGGAATTCGACG
AGCCGCCGCCCAGGCTCGAACCCTCAACCAGTTCCTCGCCGGCCGAGCGCGAGCGTGAACAGCAGCGCGAAGCCGACACC
GACGGGGGCGGCGACGGCGACAACGGCGGTACAGCCGAGCGCGAAGGCGGCGACGAAGGCATCGACTGGTCGAACGTCGG
CACCGGCACCTCGGCCAAGCGCGACGATGACGACGACGTCGACTTCCAGGAAATCCAGGCCGCCGAGCTGTCGCTGCGCG
AACACCTCGACCAGCAGGTCGCGCTGTCGCCGCTGAACGACCTCGACCGCGCACTGGTGCGCTTCATCATCGAAGCGCTC
GACGACGACGGCTACCTGTACCAGCCGCTCGAGGAACTGCTCGAACTGCTGCCGCCCGAGCTCGAGATCGACCTCGACGA
TCTGTCGATCGCGCTGCGCCACGTGCAGAACCTCGACCCGGCGGGCATCGGCGCCCGCACGCCGCAGGAGTGCCTGGCGC
TGCAGCTGCGCGCGATGCCCGAAAGCTCGATCCAGATGCTGGCGCTCGAGATCGTCGACGGGCACCTCGAACTGCTGGCC
GAACGCAACTTCGTCCGCCTGAAGAAGCTGACCGGCTGCAACGACGACGAACTGCGCGCCGCGCACGCCCTGATCTGCAG
CCTGGACCCGCATCCCGGCCTGCGCCACTCGGCTTCCGAAACGCGCTACGTGCTGCCCGACGTCGTCGTGCGCAAGGTCC
GCGGGCGCTGGAGCGTGAGCCTGAACCAGGAGGCGATGCCGCGCCTGCGCGTCAATCGCCTGTACGCCAGCCTGCTGCAG
CAGAACAGGGGACAGGGCGGCGGACTCACCGGCCAGCTCCAGGAGGCACGCTGGCTGATCAAGAACGTGCAGCAGCGCTT
CGACACCATCCTGCGCGTGTCCCAGGCCATCGTTGACCAGCAAAGACAGTTCTTCGATCATGGTGACGTGGCGATGAGGC
CACTGACCCTCCGGGAGATCGCAGACCAGCTCGAGCTGCACGAATCCACCGTATCACGCGTCACCACGCAGAAGTACATG
GCGACACCGCGTGGCGTGTTCGAACTCAAGTATTTCTTTGGCAGCCACGTTTCCACCGACACCGGCGGAGCAGCTTCCTC
AACGGCAATCCGCGCACTGATCCGCCAGCTGGTGGACGCAGAGGACAGGAAGAAACCCTTGTCCGACGCACGAATTGCAG
AAGTTCTGGGCCAGCAGGGTATCGTGGTCGCACGTCGCACCATCGCGAAATACCGCGAATCACTCAATATCCCGCCGGTC
AGTTTGCGCAAATCGATCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(122-315)

Sigma-54, DNA binding domain (Sigma54_DBD)

(331-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.371

100

0.593

Multiple sequence alignment