Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACM641_RS18250 Genome accession   NZ_CP182815
Coordinates   3551585..3552646 (-) Length   353 a.a.
NCBI ID   WP_025113994.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain A15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3546585..3557646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM641_RS18230 - 3546617..3547333 (-) 717 WP_418301385.1 YveK family protein -
  ACM641_RS18235 - 3547403..3548560 (-) 1158 WP_418301386.1 O-antigen ligase family protein -
  ACM641_RS18240 - 3548592..3549356 (-) 765 WP_418302925.1 tyrosine-protein phosphatase -
  ACM641_RS18245 rny 3549503..3551062 (-) 1560 WP_008178918.1 ribonuclease Y -
  ACM641_RS18250 recA 3551585..3552646 (-) 1062 WP_025113994.1 recombinase RecA Machinery gene
  ACM641_RS18255 cinA 3552808..3554067 (-) 1260 WP_418301387.1 competence/damage-inducible protein A Machinery gene
  ACM641_RS18260 pgsA 3554085..3554663 (-) 579 WP_025113992.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACM641_RS18265 - 3554711..3555640 (-) 930 WP_186321061.1 helix-turn-helix domain-containing protein -
  ACM641_RS18270 - 3555657..3556442 (-) 786 WP_008178931.1 DUF3388 domain-containing protein -
  ACM641_RS18275 - 3556668..3556925 (-) 258 WP_008178933.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38090.22 Da        Isoelectric Point: 4.7389

>NTDB_id=1102550 ACM641_RS18250 WP_025113994.1 3551585..3552646(-) (recA) [Lysinibacillus fusiformis strain A15]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIEIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLEEISNK
IRSSYGIAANSYTIAAHEEDEMDEELMSLLDEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1102550 ACM641_RS18250 WP_025113994.1 3551585..3552646(-) (recA) [Lysinibacillus fusiformis strain A15]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTTTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCAATCATGAAACT
CGGTGAAAAAACCGACTTAGAAATTGCGACATCTTCAAGTGGATCACTAGCACTTGACGCGGCATTAGGCGTAGGTGGTT
ATCCACGTGGACGTATTATTGAAGTGTATGGTCCTGAATCATCAGGTAAAACAACAGTTGCTTTACATGCTATTGCTGAA
GTACAAGCAAAAGGTGGACAAGCAGCATTTATCGATGCAGAACATGCATTGGACCCAATCTATGCTCAAAAATTAGGTGT
CAACATTGATGAGTTATTATTATCACAGCCAGATACAGGGGAACAAGCACTTGAAATCGCAGAAGCACTAGTTCGTAGTG
GTGCAATTGAGATCATTGTAATAGACTCCGTTGCAGCTTTAGTGCCAAAAGCTGAAATTGAAGGGGATATGGGTGATTCT
CATGTCGGCTTACAAGCCCGCTTAATGTCACAGGCATTACGTAAACTTTCAGGTTCTATTAACAAATCAAAAACGATTGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGGGTAATGTTCGGAAATCCGGAAACAACACCAGGTGGTCGTGCCCTAA
AATTCTACAGCTCTGTACGTTTAGAAGTTCGCCGTGCAGAAGCTATTAAGCAAGGTAATGATATTGTTGGTAACCGTACG
AAAATTAAAATTGTGAAAAATAAAGTAGCGCCGCCTTTCCGTACAGCTGAAGTTGATATTATGTATGGAGAAGGTATTTC
TAAAGAAGGCGAAACAGTTGATTTAGGTGTAGAATTGGACATCGTGCAAAAAAGTGGATCTTGGTATGCATATGGCGATG
AGCGTCTAGGTCAAGGACGAGAAAATGCAAAACAATATTTAAAAGAAAACCCTGCTGTTTTGGAAGAAATCTCAAACAAA
ATTCGATCATCTTATGGTATTGCTGCTAATTCTTATACAATTGCTGCACATGAAGAAGACGAGATGGATGAAGAATTAAT
GTCACTTCTTGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.455

93.484

0.799
  recA Latilactobacillus sakei subsp. sakei 23K

75.46

92.351

0.697
  recA Streptococcus mitis SK321

64.82

100

0.663
  recA Streptococcus mitis NCTC 12261

64.543

100

0.66
  recA Streptococcus pneumoniae Rx1

65.994

98.3

0.649
  recA Streptococcus pneumoniae R6

65.994

98.3

0.649
  recA Streptococcus pneumoniae TIGR4

65.994

98.3

0.649
  recA Streptococcus pneumoniae D39

65.994

98.3

0.649
  recA Streptococcus pyogenes NZ131

64.023

100

0.64
  recA Streptococcus mutans UA159

64.756

98.867

0.64
  recA Neisseria gonorrhoeae strain FA1090

63.401

98.3

0.623
  recA Neisseria gonorrhoeae MS11

63.401

98.3

0.623
  recA Neisseria gonorrhoeae MS11

63.401

98.3

0.623
  recA Lactococcus lactis subsp. cremoris KW2

65.868

94.618

0.623
  recA Helicobacter pylori strain NCTC11637

61.538

99.433

0.612
  recA Helicobacter pylori 26695

61.254

99.433

0.609
  recA Acinetobacter baylyi ADP1

61.207

98.584

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

97.167

0.603
  recA Glaesserella parasuis strain SC1401

60.519

98.3

0.595
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.635

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.351

0.589
  recA Acinetobacter baumannii D1279779

60.411

96.601

0.584
  recA Pseudomonas stutzeri DSM 10701

59.593

97.45

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.652

0.578
  recA Vibrio cholerae strain A1552

63.75

90.652

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.501

0.572

Multiple sequence alignment