Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACM641_RS18255 Genome accession   NZ_CP182815
Coordinates   3552808..3554067 (-) Length   419 a.a.
NCBI ID   WP_418301387.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain A15     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3547808..3559067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM641_RS18240 - 3548592..3549356 (-) 765 WP_418302925.1 tyrosine-protein phosphatase -
  ACM641_RS18245 rny 3549503..3551062 (-) 1560 WP_008178918.1 ribonuclease Y -
  ACM641_RS18250 recA 3551585..3552646 (-) 1062 WP_025113994.1 recombinase RecA Machinery gene
  ACM641_RS18255 cinA 3552808..3554067 (-) 1260 WP_418301387.1 competence/damage-inducible protein A Machinery gene
  ACM641_RS18260 pgsA 3554085..3554663 (-) 579 WP_025113992.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACM641_RS18265 - 3554711..3555640 (-) 930 WP_186321061.1 helix-turn-helix domain-containing protein -
  ACM641_RS18270 - 3555657..3556442 (-) 786 WP_008178931.1 DUF3388 domain-containing protein -
  ACM641_RS18275 - 3556668..3556925 (-) 258 WP_008178933.1 DUF3243 domain-containing protein -
  ACM641_RS18280 ymfI 3556970..3557698 (-) 729 WP_418301388.1 elongation factor P 5-aminopentanone reductase -
  ACM641_RS18285 yfmH 3557698..3558996 (-) 1299 WP_418301389.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45382.69 Da        Isoelectric Point: 4.9656

>NTDB_id=1102551 ACM641_RS18255 WP_418301387.1 3552808..3554067(-) (cinA) [Lysinibacillus fusiformis strain A15]
MNAEILAVGSELLLGQITNTNAKFISNQLSELGINVFYHTVVGDNAKRLEQAINVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGHPMTENNRKQALILAGSEILANHHGMAPGMIFKNNNRTYILLPGPPKELEPMF
QFEAKPKLAAMFNDGGIIASHVMRFYGIGEAELEVQVQDILDAQTNPTVAPLASDGEVTLRVTAKAETEQQAQQLIAAKV
AEIQALVGDYQYGVDDDSLVSKTVEMLVDNNLTISAAESLTAGLFQSELAEIPGVGNALIGGIVTYAAEAKVKHLGISQE
LIDTHGVVSGECAAAMASAIRKQFGTNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQRLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1102551 ACM641_RS18255 WP_418301387.1 3552808..3554067(-) (cinA) [Lysinibacillus fusiformis strain A15]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAGCTATTATTAGGTCAAATTACGAATACGAATGCGAAATTTATCTCGAA
CCAGTTATCCGAGCTAGGCATTAATGTTTTTTACCATACAGTAGTTGGTGATAATGCAAAACGTTTAGAACAAGCTATTA
ATGTGGCAGAATCTCGTGCAGATTTAATAATATTTTCGGGAGGACTAGGACCTACGAAAGATGATTTAACAAAAGAAACG
ATTGCTCGCCATCTCGGTGTTTCTCTTGAGTTTGATGAAGTTGCATTAACGTATATTGAGCAGTTTTTTGCCAAGCGAGG
ACATCCTATGACGGAGAATAACCGGAAACAGGCTTTAATTCTAGCTGGAAGCGAAATACTAGCCAATCACCATGGAATGG
CGCCTGGTATGATTTTCAAAAACAATAATCGTACGTATATCTTGCTCCCAGGGCCACCAAAAGAGCTTGAACCTATGTTT
CAATTTGAGGCGAAACCTAAGCTTGCCGCGATGTTTAACGATGGAGGAATCATTGCCTCTCATGTGATGCGTTTTTATGG
GATTGGTGAGGCCGAACTTGAAGTTCAGGTACAGGATATTTTAGATGCCCAAACAAATCCAACTGTTGCTCCACTTGCGT
CGGATGGTGAGGTAACATTACGCGTAACAGCTAAAGCAGAAACCGAACAGCAAGCCCAACAACTTATTGCCGCCAAAGTA
GCAGAGATACAAGCCCTTGTTGGTGACTATCAATATGGTGTGGATGATGACTCACTTGTTTCAAAGACAGTTGAAATGCT
AGTAGACAATAATCTAACTATTTCTGCTGCGGAAAGTTTAACGGCAGGGTTGTTTCAATCAGAGCTTGCGGAAATTCCAG
GGGTAGGAAATGCACTCATTGGAGGCATAGTAACCTATGCGGCAGAAGCAAAAGTAAAGCATCTTGGTATTTCACAAGAA
TTAATAGATACACACGGCGTTGTTAGCGGTGAATGTGCTGCTGCAATGGCAAGTGCAATTCGAAAACAGTTTGGGACAAA
TATCGGCATTGGGTTAACAGGAGAAGCAGGGCCTACAGCACATGACCATCAGCCAGTAGGAACGGTTTGGATTGGTATTG
CTATCAATGATGAGGAGCCACTTACATACTTACTTCATTTATCTGGTATGCGTAATACAAATCGACTCCGTGCAGTGAAA
TTTACATGCCATTATTTAATGCAGCGTTTGGAAGAACGCGGCTATACAAAACGATATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.456

98.329

0.506
  cinA Streptococcus mitis SK321

44.675

91.885

0.41
  cinA Streptococcus pneumoniae Rx1

44.386

91.408

0.406
  cinA Streptococcus pneumoniae TIGR4

44.386

91.408

0.406
  cinA Streptococcus pneumoniae R6

44.386

91.408

0.406
  cinA Streptococcus mitis NCTC 12261

43.896

91.885

0.403
  cinA Streptococcus pneumoniae D39

44.125

91.408

0.403
  cinA Streptococcus mutans UA159

44.327

90.453

0.401

Multiple sequence alignment