Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACM1PH_RS03445 Genome accession   NZ_CP181055
Coordinates   631420..632475 (-) Length   351 a.a.
NCBI ID   WP_135505276.1    Uniprot ID   -
Organism   Planococcus koreensis strain OC-PG-Soil     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 626420..637475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1PH_RS03430 (ACM1PH_03430) - 627360..627788 (-) 429 WP_135505280.1 RicAFT regulatory complex protein RicA family protein -
  ACM1PH_RS03435 (ACM1PH_03435) - 628025..628822 (-) 798 WP_416144870.1 TIGR00282 family metallophosphoesterase -
  ACM1PH_RS03440 (ACM1PH_03440) rny 628889..630448 (-) 1560 WP_135505278.1 ribonuclease Y -
  ACM1PH_RS03445 (ACM1PH_03445) recA 631420..632475 (-) 1056 WP_135505276.1 recombinase RecA Machinery gene
  ACM1PH_RS03450 (ACM1PH_03450) cinA 632649..633902 (-) 1254 WP_416144871.1 competence/damage-inducible protein A Machinery gene
  ACM1PH_RS03455 (ACM1PH_03455) pgsA 633943..634521 (-) 579 WP_416144872.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACM1PH_RS03460 (ACM1PH_03460) - 634570..634815 (-) 246 WP_416144873.1 DUF4115 domain-containing protein -
  ACM1PH_RS03465 (ACM1PH_03465) - 634878..635444 (-) 567 WP_416144874.1 helix-turn-helix domain-containing protein -
  ACM1PH_RS03470 (ACM1PH_03470) - 635462..636259 (-) 798 WP_135505268.1 YmfK family protein -
  ACM1PH_RS03475 (ACM1PH_03475) ymfI 636379..637098 (-) 720 WP_416144875.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37829.09 Da        Isoelectric Point: 5.0806

>NTDB_id=1097944 ACM1PH_RS03445 WP_135505276.1 631420..632475(-) (recA) [Planococcus koreensis strain OC-PG-Soil]
MSDRKAALDMALKGIEKQFGKGSVMKLGEKSDRNVSSVSSGSLAIDTALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
AQAAGGTAAFIDAEHALDPVYAKNLGVNIDELLLSQPDTGEQALEITEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGIINKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRMEIRRAEALKSGNDIIGNRT
KIKVVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSDLEIIQKSGSWYSYKEERIGQGRENAKQFLMANPEIRNEISNK
VRESLGMAAATYTIAANADEPEEFNLLIDEE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1097944 ACM1PH_RS03445 WP_135505276.1 631420..632475(-) (recA) [Planococcus koreensis strain OC-PG-Soil]
TTGAGCGATCGTAAAGCAGCATTGGATATGGCGTTAAAAGGAATAGAAAAGCAATTTGGTAAAGGTTCGGTCATGAAATT
AGGCGAGAAAAGCGACCGCAACGTATCATCGGTTTCAAGTGGATCATTGGCGATTGATACTGCTTTGGGAATAGGCGGAT
ACCCGCGCGGGCGGGTCATCGAAATTTACGGCCCTGAAAGTTCAGGTAAAACGACCGTTTCACTTCATGCGATTGCAGAA
GCGCAAGCAGCAGGCGGCACAGCAGCATTTATCGATGCCGAGCATGCGCTTGATCCAGTTTACGCAAAAAATCTTGGTGT
AAACATCGATGAGCTATTGCTGTCACAGCCTGATACAGGGGAGCAAGCGCTTGAAATTACGGAAGCATTAGTGCGAAGCG
GTGCAGTTGACATCGTAGTCATTGACTCCGTAGCGGCACTTGTGCCAAAAGCTGAGATCGAAGGCGAAATGGGCGACTCG
CATATGGGCTTGCAGGCTCGCTTAATGTCCCAGGCTTTGCGTAAATTATCCGGTATTATCAACAAATCGAATACGATTGT
CATTTTCATCAACCAGATCCGTGAGAAAATCGGTGTGATGTTCGGTAACCCGGAAACAACTCCAGGCGGCCGTGCTCTGA
AATTCTATTCTTCAGTACGCATGGAAATCAGACGCGCAGAAGCATTGAAATCAGGCAATGACATTATCGGTAACAGAACG
AAGATCAAAGTTGTCAAAAACAAAGTTGCTCCACCGTTCCGTACTGCAGAAGTGGATATCATGTACGGAAAAGGGATTTC
ACGCGAAGGTGAAATCGTCGATATCGGTTCTGATCTGGAAATCATCCAGAAGAGTGGTTCTTGGTATTCGTACAAAGAAG
AACGCATCGGGCAAGGCCGTGAAAACGCTAAGCAGTTCTTAATGGCGAATCCTGAAATCCGCAACGAAATCTCCAACAAA
GTCCGTGAATCATTAGGCATGGCTGCAGCTACGTATACGATTGCTGCGAATGCTGATGAGCCGGAAGAGTTCAATCTTTT
GATTGACGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.957

93.162

0.764
  recA Latilactobacillus sakei subsp. sakei 23K

70.115

99.145

0.695
  recA Streptococcus pyogenes NZ131

65.903

99.43

0.655
  recA Streptococcus mutans UA159

68.997

93.732

0.647
  recA Streptococcus mitis NCTC 12261

67.576

94.017

0.635
  recA Streptococcus mitis SK321

67.273

94.017

0.632
  recA Streptococcus pneumoniae Rx1

67.273

94.017

0.632
  recA Streptococcus pneumoniae D39

67.273

94.017

0.632
  recA Streptococcus pneumoniae R6

67.273

94.017

0.632
  recA Streptococcus pneumoniae TIGR4

67.273

94.017

0.632
  recA Acinetobacter baylyi ADP1

62.931

99.145

0.624
  recA Ralstonia pseudosolanacearum GMI1000

66.361

93.162

0.618
  recA Glaesserella parasuis strain SC1401

62.941

96.866

0.61
  recA Lactococcus lactis subsp. cremoris KW2

64.848

94.017

0.61
  recA Acinetobacter baumannii D1279779

60.807

98.86

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.939

94.017

0.601
  recA Helicobacter pylori strain NCTC11637

61.404

97.436

0.598
  recA Helicobacter pylori 26695

61.404

97.436

0.598
  recA Pseudomonas stutzeri DSM 10701

64.024

93.447

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.706

92.023

0.595
  recA Vibrio cholerae strain A1552

64.706

92.023

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

92.877

0.595
  recA Neisseria gonorrhoeae MS11

66.019

88.034

0.581
  recA Neisseria gonorrhoeae strain FA1090

66.019

88.034

0.581
  recA Neisseria gonorrhoeae MS11

66.019

88.034

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

91.168

0.57

Multiple sequence alignment