Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACM1PH_RS03450 Genome accession   NZ_CP181055
Coordinates   632649..633902 (-) Length   417 a.a.
NCBI ID   WP_416144871.1    Uniprot ID   -
Organism   Planococcus koreensis strain OC-PG-Soil     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 627649..638902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1PH_RS03435 (ACM1PH_03435) - 628025..628822 (-) 798 WP_416144870.1 TIGR00282 family metallophosphoesterase -
  ACM1PH_RS03440 (ACM1PH_03440) rny 628889..630448 (-) 1560 WP_135505278.1 ribonuclease Y -
  ACM1PH_RS03445 (ACM1PH_03445) recA 631420..632475 (-) 1056 WP_135505276.1 recombinase RecA Machinery gene
  ACM1PH_RS03450 (ACM1PH_03450) cinA 632649..633902 (-) 1254 WP_416144871.1 competence/damage-inducible protein A Machinery gene
  ACM1PH_RS03455 (ACM1PH_03455) pgsA 633943..634521 (-) 579 WP_416144872.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACM1PH_RS03460 (ACM1PH_03460) - 634570..634815 (-) 246 WP_416144873.1 DUF4115 domain-containing protein -
  ACM1PH_RS03465 (ACM1PH_03465) - 634878..635444 (-) 567 WP_416144874.1 helix-turn-helix domain-containing protein -
  ACM1PH_RS03470 (ACM1PH_03470) - 635462..636259 (-) 798 WP_135505268.1 YmfK family protein -
  ACM1PH_RS03475 (ACM1PH_03475) ymfI 636379..637098 (-) 720 WP_416144875.1 elongation factor P 5-aminopentanone reductase -
  ACM1PH_RS03480 (ACM1PH_03480) yfmH 637095..638396 (-) 1302 WP_416144876.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45423.77 Da        Isoelectric Point: 4.8142

>NTDB_id=1097945 ACM1PH_RS03450 WP_416144871.1 632649..633902(-) (cinA) [Planococcus koreensis strain OC-PG-Soil]
MNAEIIAVGSELLLGQITNSNARFISSNLAELGINVYYHTVVGDNPDRLKSVIEIAEQRADLIIFTGGLGPTKDDLTKST
IAEHLNTSLEMDQVALDSIVAYFERAGRTMTYNNNKQALVLKDSEVLENHHGMAPGMLYKSGEHVYILLPGPPKEMEPMF
QFEAKPKLARMLNKEDVILSHVLRFYGIGEAELEDRIQDLLEKQTNPTIAPLASDSEVTLRITAKTGTEEQAWELINGAK
KEILEIVGDYLYGYDDDSLASKTVELLREQHKTISAAESLTAGLFQAELAAIPGVSKALKGGVIAYNEEMKIKQLGISTD
LLAQYGVVSEETAIAMAEAVRSKFGTDISVSLTGAAGPDAHGEQPAGTVWIGIADENGAKAYRLQLSGMRNSNRLRAVKL
ALYYVIRTLAAGDARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1097945 ACM1PH_RS03450 WP_416144871.1 632649..633902(-) (cinA) [Planococcus koreensis strain OC-PG-Soil]
ATGAACGCAGAAATCATTGCGGTAGGCAGCGAATTATTGCTTGGGCAAATCACCAATTCCAATGCCCGTTTTATTTCAAG
CAACCTTGCGGAACTCGGGATCAATGTTTATTACCACACAGTGGTCGGCGATAATCCAGACCGGCTGAAAAGCGTCATTG
AAATTGCCGAACAACGAGCCGATCTGATTATTTTCACAGGCGGGCTTGGACCGACAAAAGACGATTTGACGAAAAGCACA
ATTGCGGAACATCTGAATACAAGTTTGGAAATGGATCAAGTCGCGCTGGATTCGATCGTTGCCTATTTCGAACGAGCTGG
ACGCACGATGACTTATAACAACAACAAACAGGCATTGGTGCTGAAAGACAGCGAAGTGCTGGAAAATCACCACGGCATGG
CACCCGGTATGCTTTACAAATCAGGCGAACATGTCTATATTTTACTTCCTGGCCCGCCGAAAGAAATGGAGCCGATGTTC
CAATTCGAAGCGAAGCCGAAACTGGCCCGCATGCTGAACAAAGAAGATGTCATTTTATCGCATGTCCTGCGCTTTTATGG
CATCGGAGAAGCGGAACTCGAAGACCGGATCCAGGATTTGCTGGAAAAGCAAACCAATCCGACCATCGCACCGCTTGCTT
CGGATTCTGAAGTGACTTTGCGCATTACAGCGAAGACCGGAACAGAAGAACAGGCTTGGGAATTGATCAACGGGGCTAAG
AAAGAAATTCTGGAGATTGTCGGAGATTACCTTTATGGCTACGACGATGACTCTCTAGCTTCGAAGACGGTTGAGCTGTT
GAGAGAACAGCATAAGACCATCTCGGCTGCAGAAAGCTTAACGGCCGGCTTGTTCCAAGCAGAGCTCGCGGCCATTCCAG
GCGTCAGCAAAGCATTAAAAGGCGGAGTCATCGCTTATAATGAGGAAATGAAAATCAAGCAGCTCGGAATATCCACTGAT
TTGCTTGCGCAATACGGCGTAGTCAGCGAAGAAACAGCAATCGCTATGGCGGAGGCCGTACGCTCGAAATTCGGAACAGA
CATCAGTGTCTCGTTAACGGGTGCTGCAGGTCCGGATGCACATGGTGAGCAGCCGGCAGGAACAGTTTGGATCGGCATAG
CTGATGAAAACGGAGCAAAAGCTTATCGCCTCCAGCTTTCTGGCATGCGCAATTCAAACAGGCTCAGAGCCGTCAAATTG
GCTTTGTACTATGTTATACGAACACTGGCCGCAGGAGACGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.106

97.602

0.499
  cinA Streptococcus mutans UA159

45.411

99.281

0.451
  cinA Streptococcus mitis SK321

44.712

99.76

0.446
  cinA Streptococcus mitis NCTC 12261

43.99

99.76

0.439
  cinA Streptococcus pneumoniae TIGR4

43.75

99.76

0.436
  cinA Streptococcus pneumoniae Rx1

43.269

99.76

0.432
  cinA Streptococcus pneumoniae R6

43.269

99.76

0.432
  cinA Streptococcus pneumoniae D39

43.029

99.76

0.429

Multiple sequence alignment