Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACM26V_RS07925 Genome accession   NZ_CP181045
Coordinates   1603248..1604327 (-) Length   359 a.a.
NCBI ID   WP_416150880.1    Uniprot ID   -
Organism   Salipaludibacillus sp. HK11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1598248..1609327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM26V_RS07910 (ACM26V_07910) - 1599454..1599714 (-) 261 WP_416150877.1 stage V sporulation protein S -
  ACM26V_RS07915 (ACM26V_07915) - 1600076..1600870 (-) 795 WP_416150878.1 TIGR00282 family metallophosphoesterase -
  ACM26V_RS07920 (ACM26V_07920) rny 1601211..1602773 (-) 1563 WP_416150879.1 ribonuclease Y -
  ACM26V_RS07925 (ACM26V_07925) recA 1603248..1604327 (-) 1080 WP_416150880.1 recombinase RecA Machinery gene
  ACM26V_RS07930 (ACM26V_07930) - 1604564..1606147 (-) 1584 WP_416150881.1 DEAD/DEAH box helicase -
  ACM26V_RS07935 (ACM26V_07935) cinA 1606150..1607424 (-) 1275 WP_416150882.1 competence/damage-inducible protein A Machinery gene
  ACM26V_RS07940 (ACM26V_07940) pgsA 1607441..1608019 (-) 579 WP_416150883.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACM26V_RS07945 (ACM26V_07945) - 1608254..1609138 (-) 885 WP_416150884.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38886.44 Da        Isoelectric Point: 6.8985

>NTDB_id=1097907 ACM26V_RS07925 WP_416150880.1 1603248..1604327(-) (recA) [Salipaludibacillus sp. HK11]
MSDRKQALDMALKQIEKQYGKGSIMKLGEQAGQRVSTISSGTLALDIALGVGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYAQNLGVNIDELLLSQPDTGEQGLEIAEALVRSGAIDIVIVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAVSKSKTIVMFINQIREKVGIMFGNPETTPGGRALKFYASVRLEVRRAEQLKQGNDIMGNKT
KLKVVKNKVAPPFRTAEVDIMYGLGISREGSILDIGSELDIVVKSGAWYSYNEERMGQGRENAKQFLKENSKIAGEIDMK
IREYHGLVEPKEEAVSKDVGKDSSKESSKDQVTAKLEQK

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=1097907 ACM26V_RS07925 WP_416150880.1 1603248..1604327(-) (recA) [Salipaludibacillus sp. HK11]
ATGTCAGATCGAAAACAAGCATTAGACATGGCGTTAAAGCAAATTGAAAAGCAATATGGAAAAGGTTCTATCATGAAATT
AGGAGAACAAGCAGGACAAAGAGTATCCACTATATCTAGTGGAACATTAGCATTGGATATTGCGTTAGGCGTTGGTGGTT
ATCCTCGTGGACGAGTAATTGAGGTTTATGGACCAGAATCATCAGGTAAAACAACGGTTGCTCTTCATGCGATTGCTGAA
GTTCAACGAAATGGTGGACAAGCGGCATTTATTGATGCAGAGCACGCGCTCGATCCTGTTTATGCTCAAAATTTAGGTGT
TAATATTGATGAATTACTATTATCACAGCCTGATACAGGTGAGCAAGGTTTGGAAATCGCAGAAGCGCTTGTACGAAGTG
GAGCTATTGACATTGTCATCGTCGACTCTGTTGCAGCACTTGTTCCAAAAGCAGAAATCGAAGGTGAAATGGGTGACAGT
CATGTAGGGCTTCAAGCTCGACTTATGTCTCAAGCTTTACGTAAGCTTTCTGGAGCAGTTAGCAAATCGAAAACGATCGT
TATGTTTATTAACCAAATCCGTGAAAAAGTTGGCATTATGTTTGGAAACCCAGAAACAACTCCTGGTGGGCGCGCCCTTA
AGTTCTACGCTTCTGTTCGTTTAGAAGTGCGAAGAGCGGAACAACTGAAACAAGGAAACGATATTATGGGAAATAAAACA
AAGTTAAAAGTAGTAAAAAACAAAGTAGCACCTCCGTTTAGAACTGCTGAAGTAGACATTATGTATGGTCTTGGGATTTC
TAGAGAAGGTTCAATACTTGATATTGGTTCGGAATTAGATATTGTTGTTAAAAGCGGTGCGTGGTACTCCTATAATGAAG
AAAGAATGGGACAAGGTCGTGAAAACGCAAAACAATTTTTGAAAGAAAACTCAAAAATTGCTGGTGAGATTGACATGAAG
ATTCGTGAATATCATGGATTGGTAGAGCCGAAAGAAGAGGCAGTTTCTAAAGACGTAGGTAAGGATTCGTCTAAAGAATC
ATCTAAAGATCAAGTGACAGCAAAATTAGAACAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.709

91.086

0.772
  recA Latilactobacillus sakei subsp. sakei 23K

70.695

92.201

0.652
  recA Streptococcus pneumoniae Rx1

64.82

100

0.652
  recA Streptococcus pneumoniae D39

64.82

100

0.652
  recA Streptococcus pneumoniae R6

64.82

100

0.652
  recA Streptococcus pneumoniae TIGR4

64.82

100

0.652
  recA Streptococcus mutans UA159

66.006

98.329

0.649
  recA Streptococcus mitis NCTC 12261

67.353

94.708

0.638
  recA Streptococcus mitis SK321

67.059

94.708

0.635
  recA Streptococcus pyogenes NZ131

67.988

91.365

0.621
  recA Lactococcus lactis subsp. cremoris KW2

65.579

93.872

0.616
  recA Ralstonia pseudosolanacearum GMI1000

60.227

98.05

0.591
  recA Neisseria gonorrhoeae strain FA1090

64.724

90.808

0.588
  recA Neisseria gonorrhoeae MS11

64.724

90.808

0.588
  recA Neisseria gonorrhoeae MS11

64.724

90.808

0.588
  recA Glaesserella parasuis strain SC1401

59.429

97.493

0.579
  recA Vibrio cholerae strain A1552

62.614

91.643

0.574
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.614

91.643

0.574
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.577

90.808

0.568
  recA Helicobacter pylori strain NCTC11637

62.462

90.529

0.565
  recA Helicobacter pylori 26695

62.462

90.529

0.565
  recA Acinetobacter baylyi ADP1

62.346

90.251

0.563
  recA Acinetobacter baumannii D1279779

62.305

89.415

0.557
  recA Pseudomonas stutzeri DSM 10701

62.187

89.136

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.939

91.086

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.127

88.022

0.529

Multiple sequence alignment