Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACM26V_RS07935 Genome accession   NZ_CP181045
Coordinates   1606150..1607424 (-) Length   424 a.a.
NCBI ID   WP_416150882.1    Uniprot ID   -
Organism   Salipaludibacillus sp. HK11     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1601150..1612424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM26V_RS07920 (ACM26V_07920) rny 1601211..1602773 (-) 1563 WP_416150879.1 ribonuclease Y -
  ACM26V_RS07925 (ACM26V_07925) recA 1603248..1604327 (-) 1080 WP_416150880.1 recombinase RecA Machinery gene
  ACM26V_RS07930 (ACM26V_07930) - 1604564..1606147 (-) 1584 WP_416150881.1 DEAD/DEAH box helicase -
  ACM26V_RS07935 (ACM26V_07935) cinA 1606150..1607424 (-) 1275 WP_416150882.1 competence/damage-inducible protein A Machinery gene
  ACM26V_RS07940 (ACM26V_07940) pgsA 1607441..1608019 (-) 579 WP_416150883.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACM26V_RS07945 (ACM26V_07945) - 1608254..1609138 (-) 885 WP_416150884.1 RodZ domain-containing protein -
  ACM26V_RS07950 (ACM26V_07950) - 1609155..1609928 (-) 774 WP_416150885.1 DUF3388 domain-containing protein -
  ACM26V_RS07955 (ACM26V_07955) - 1610270..1610518 (-) 249 WP_416150886.1 DUF3243 domain-containing protein -
  ACM26V_RS07960 (ACM26V_07960) ymfI 1610595..1611332 (-) 738 WP_416150887.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 46962.54 Da        Isoelectric Point: 5.6921

>NTDB_id=1097908 ACM26V_RS07935 WP_416150882.1 1606150..1607424(-) (cinA) [Salipaludibacillus sp. HK11]
MRVNAEIIAVGSELLLGQIQNSNATYISGQLSSIGIDVYHHVVVGDNPNRLSEVVESGLNRSDLLIFTGGLGPTKDDLTK
ETVAKVTGKELVYDRETEERIESHFAQRRREMTANNRKQAMVLKDAKILANDQGLACGMVVEHNNKYIVMLPGPPSELIP
MVNNYLMPFLKKKLVLNEEIQSMVLRFFDIGESQLVEKVDDLIEQQTNPTIAPLASGGEVTLRLTVKGSDKQENDFQLQQ
LKSKILERLGYYYYGEDESQLANILFRELKATGQSIAAAESLTGGLFSTMMTSEPGSSSVFTGGIICYSNSVKHTELAIS
QKLLQTEGAISSSCAKEMAINIKQKYHSDIGISFTGVAGPNSSEGHEPGIVYIGIATKHHEETYLLRLAGSRENIRERSV
KYGMYYLIQCLSKEKEKEKIKVDE

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=1097908 ACM26V_RS07935 WP_416150882.1 1606150..1607424(-) (cinA) [Salipaludibacillus sp. HK11]
ATGAGAGTGAATGCTGAAATTATTGCAGTAGGTTCGGAATTACTTCTCGGACAAATCCAAAATTCAAATGCTACATACAT
ATCTGGTCAACTATCGTCTATTGGAATTGATGTATATCATCATGTTGTAGTGGGGGATAACCCAAATCGATTATCTGAAG
TCGTTGAATCAGGATTAAATCGATCAGATTTATTGATTTTTACCGGGGGATTAGGACCAACGAAAGATGATTTAACGAAA
GAAACAGTTGCTAAGGTAACAGGGAAAGAGCTTGTCTATGATAGAGAAACAGAGGAGCGAATTGAATCACATTTCGCCCA
AAGACGTCGAGAAATGACTGCGAACAATCGAAAACAAGCGATGGTACTGAAAGACGCAAAAATACTAGCGAATGACCAAG
GGTTAGCATGTGGAATGGTTGTCGAGCATAACAACAAATATATCGTTATGTTACCAGGTCCCCCTAGTGAACTTATCCCG
ATGGTTAACAATTACTTAATGCCTTTTTTGAAAAAAAAGCTAGTTCTAAACGAAGAAATTCAATCAATGGTTTTGCGTTT
TTTTGATATCGGTGAATCACAATTGGTAGAAAAAGTCGATGATTTAATAGAACAACAAACTAATCCGACAATTGCACCTC
TTGCTTCTGGAGGTGAGGTGACGCTCCGATTAACTGTCAAGGGGTCGGATAAACAAGAGAACGATTTCCAATTACAACAA
TTGAAATCGAAAATTCTAGAACGCCTTGGTTATTATTATTACGGTGAAGATGAAAGTCAATTAGCAAATATTTTATTTCG
AGAATTGAAAGCAACTGGTCAATCGATTGCAGCAGCTGAGAGTTTAACGGGAGGCTTATTTTCGACAATGATGACAAGTG
AGCCAGGATCTTCATCTGTTTTTACAGGGGGGATAATATGTTATAGTAATTCAGTGAAGCATACTGAATTGGCTATCTCA
CAGAAATTGTTGCAAACTGAAGGCGCGATTAGTTCATCGTGCGCTAAAGAAATGGCGATAAATATTAAACAGAAATATCA
TAGTGATATTGGAATTAGTTTTACCGGCGTCGCAGGACCAAATTCTTCAGAAGGGCACGAACCTGGCATCGTATATATTG
GTATTGCAACAAAGCACCACGAGGAAACATATTTGCTTCGTTTAGCAGGAAGTAGAGAAAATATTAGAGAACGATCTGTA
AAGTATGGCATGTATTATTTAATTCAATGTTTGAGTAAGGAAAAGGAAAAGGAAAAGATAAAGGTGGATGAATAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(7-172)

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(183-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.951

96.698

0.502
  cinA Streptococcus mitis SK321

46.429

99.057

0.46
  cinA Streptococcus mitis NCTC 12261

45.952

99.057

0.455
  cinA Streptococcus pneumoniae TIGR4

45.714

99.057

0.453
  cinA Streptococcus pneumoniae Rx1

45.714

99.057

0.453
  cinA Streptococcus pneumoniae R6

45.714

99.057

0.453
  cinA Streptococcus pneumoniae D39

45.476

99.057

0.45
  cinA Streptococcus mutans UA159

43.78

98.585

0.432

Multiple sequence alignment