Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMHYH_RS03005 Genome accession   NZ_CP180212
Coordinates   613266..614345 (+) Length   359 a.a.
NCBI ID   WP_414839893.1    Uniprot ID   -
Organism   Carnobacterium sp. TMP28 isolate 11T.7.20.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 608266..619345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYH_RS02985 (ACMHYH_02985) ymfI 609263..609988 (+) 726 WP_414839890.1 elongation factor P 5-aminopentanone reductase -
  ACMHYH_RS02990 (ACMHYH_02990) - 610143..611003 (+) 861 WP_414839891.1 helix-turn-helix domain-containing protein -
  ACMHYH_RS02995 (ACMHYH_02995) pgsA 611091..611672 (+) 582 WP_414840331.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACMHYH_RS03000 (ACMHYH_03000) cinA 611839..613104 (+) 1266 WP_414839892.1 competence/damage-inducible protein A Machinery gene
  ACMHYH_RS03005 (ACMHYH_03005) recA 613266..614345 (+) 1080 WP_414839893.1 recombinase RecA Machinery gene
  ACMHYH_RS03010 (ACMHYH_03010) rny 614650..616209 (+) 1560 WP_414839894.1 ribonuclease Y -
  ACMHYH_RS03015 (ACMHYH_03015) - 616385..617191 (+) 807 WP_414839895.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38832.41 Da        Isoelectric Point: 5.6367

>NTDB_id=1094602 ACMHYH_RS03005 WP_414839893.1 613266..614345(+) (recA) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
MAEDRKQALELALKKIEKNFGKGSVMKLGEKVDTRISTIPSGSLALDVALGVGGFPRGRIIEVYGPESSGKTTVALHAVA
EVQKQGGIAAFIDAENALDPKYAAALGVDIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQIKQGTDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGEGISQVGELVDMGSEKDIIDKAGAWYSYEGERIGQGRENAKRYFLDHPELRAEIEK
KVRAAYGIGDALEETEKTEKKKTDATPEKKDKPTSTEEK

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=1094602 ACMHYH_RS03005 WP_414839893.1 613266..614345(+) (recA) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
ATGGCAGAAGATCGTAAGCAAGCGTTAGAATTAGCATTGAAAAAAATTGAGAAAAATTTTGGTAAAGGCTCAGTCATGAA
GTTAGGAGAAAAAGTTGATACTCGTATTTCAACTATTCCAAGTGGTTCATTGGCACTAGATGTAGCACTTGGGGTAGGTG
GCTTTCCAAGAGGAAGAATTATAGAAGTATATGGACCAGAAAGTTCAGGTAAAACAACCGTTGCATTGCATGCAGTGGCA
GAAGTTCAAAAACAAGGCGGAATAGCTGCGTTTATCGATGCTGAAAATGCATTGGATCCTAAATATGCAGCAGCATTGGG
AGTAGACATTGATGAGTTGCTTTTATCACAACCTGACACAGGCGAACAAGGCTTAGAAATCGCCGATGCATTAGTTTCGA
GTGGAGCTGTAGATATTGTTGTTATTGATTCAGTAGCGGCATTAGTTCCTCGTGCAGAAATCGAAGGCGAAATGGGAGAC
AGCCATGTTGGTTTACAAGCTCGCTTGATGTCTCAAGCTCTTCGTAAATTATCCGGTTCAATTAATAAAACAAAAACAAT
CGCTTTGTTCATCAATCAGATTCGTGAAAAAGTAGGAGTTATGTTTGGTAATCCTGAAATAACACCGGGTGGTCGTGCTC
TTAAATTTTATGCAACTATTCGTTTAGAAGTAAGACGTGCAGAACAAATTAAGCAAGGGACAGATATTGTGGGAAACCGT
ACGAAAATAAAAGTTGTAAAAAATAAAGTGGCTCCGCCGTTTAGAGTAGCAGAAGTTGATATTATGTATGGAGAAGGTAT
TTCTCAAGTTGGTGAACTCGTAGATATGGGGTCAGAAAAAGACATCATTGACAAAGCAGGAGCTTGGTATTCTTATGAAG
GTGAAAGAATTGGGCAAGGACGTGAAAATGCAAAACGCTATTTCTTAGATCATCCTGAGTTAAGAGCCGAAATAGAGAAA
AAAGTACGTGCAGCCTATGGTATAGGTGATGCGTTAGAAGAAACAGAAAAAACTGAAAAAAAGAAAACTGACGCAACTCC
AGAAAAAAAAGATAAACCAACTTCAACAGAAGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.056

100

0.783
  recA Bacillus subtilis subsp. subtilis str. 168

77.846

90.529

0.705
  recA Streptococcus pneumoniae D39

68.436

99.721

0.682
  recA Streptococcus pneumoniae R6

68.436

99.721

0.682
  recA Streptococcus pneumoniae Rx1

68.436

99.721

0.682
  recA Streptococcus pneumoniae TIGR4

68.436

99.721

0.682
  recA Streptococcus mitis SK321

69.034

98.05

0.677
  recA Streptococcus mutans UA159

67.877

99.721

0.677
  recA Streptococcus mitis NCTC 12261

68.466

98.05

0.671
  recA Streptococcus pyogenes NZ131

72.508

92.201

0.669
  recA Lactococcus lactis subsp. cremoris KW2

68.58

92.201

0.632
  recA Neisseria gonorrhoeae strain FA1090

60.286

97.493

0.588
  recA Neisseria gonorrhoeae MS11

60.286

97.493

0.588
  recA Neisseria gonorrhoeae MS11

60.286

97.493

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

91.086

0.563
  recA Ralstonia pseudosolanacearum GMI1000

64.537

87.187

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

91.922

0.56
  recA Acinetobacter baumannii D1279779

61.61

89.972

0.554
  recA Pseudomonas stutzeri DSM 10701

56.695

97.772

0.554
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.647

94.708

0.546
  recA Acinetobacter baylyi ADP1

60.681

89.972

0.546
  recA Glaesserella parasuis strain SC1401

61.059

89.415

0.546
  recA Vibrio cholerae strain A1552

59.752

89.972

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.752

89.972

0.538
  recA Helicobacter pylori strain NCTC11637

59.202

90.808

0.538
  recA Helicobacter pylori 26695

59.202

90.808

0.538

Multiple sequence alignment