Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACMHYH_RS03000 Genome accession   NZ_CP180212
Coordinates   611839..613104 (+) Length   421 a.a.
NCBI ID   WP_414839892.1    Uniprot ID   -
Organism   Carnobacterium sp. TMP28 isolate 11T.7.20.2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 606839..618104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYH_RS02980 (ACMHYH_02980) yfmH 607965..609266 (+) 1302 WP_414839889.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACMHYH_RS02985 (ACMHYH_02985) ymfI 609263..609988 (+) 726 WP_414839890.1 elongation factor P 5-aminopentanone reductase -
  ACMHYH_RS02990 (ACMHYH_02990) - 610143..611003 (+) 861 WP_414839891.1 helix-turn-helix domain-containing protein -
  ACMHYH_RS02995 (ACMHYH_02995) pgsA 611091..611672 (+) 582 WP_414840331.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACMHYH_RS03000 (ACMHYH_03000) cinA 611839..613104 (+) 1266 WP_414839892.1 competence/damage-inducible protein A Machinery gene
  ACMHYH_RS03005 (ACMHYH_03005) recA 613266..614345 (+) 1080 WP_414839893.1 recombinase RecA Machinery gene
  ACMHYH_RS03010 (ACMHYH_03010) rny 614650..616209 (+) 1560 WP_414839894.1 ribonuclease Y -
  ACMHYH_RS03015 (ACMHYH_03015) - 616385..617191 (+) 807 WP_414839895.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46843.81 Da        Isoelectric Point: 5.7533

>NTDB_id=1094601 ACMHYH_RS03000 WP_414839892.1 611839..613104(+) (cinA) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
MNAEIIAVGTELLLGQVVNTNATFLSKELATLGIEVYHQSVVGDNPKRLKEEIERAEKRSDLVILTGGLGPTKDDLTKQV
IADHLGKKLVMDKAALEKIHLFHEQRKHPMSENNQLQALVIEESIVLKNNNGLAVGMFLNLENQFYLLLPGPPHELEKMF
EQEAKPLLLKQLSKDTVLMSRVLRFYGIGESRLVTLLDDLIENQVNPTLASYTGKYEVSLRLTANGSSDTDCKGKLDNLE
AMIRERVGDYIYGYGDDTSLVKVVSELIKEKKLTLSAAESLTGGTFQSMLTSISGASEFFEGGLVTYSNRIKKEQLSIDS
KTIDQFGVVSSQCAIEMAENTKKIFQSDIGISFTGVAGPLELENKKPGTVWIGIAVKNKETYAKCFHFEGDRNKNRELSV
LSGLYLIYRDLLNKQISEKIY

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=1094601 ACMHYH_RS03000 WP_414839892.1 611839..613104(+) (cinA) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
ATGAATGCTGAAATAATTGCAGTTGGAACAGAATTATTATTAGGACAGGTAGTCAATACAAATGCAACTTTTTTGTCTAA
AGAATTAGCGACACTAGGGATTGAAGTCTATCACCAGTCTGTTGTAGGAGATAATCCTAAAAGATTAAAAGAGGAAATAG
AACGTGCTGAAAAAAGAAGTGATTTAGTTATTTTAACTGGTGGTTTAGGCCCAACTAAAGATGATTTAACCAAGCAGGTA
ATAGCAGATCATCTGGGTAAAAAATTAGTAATGGATAAAGCAGCATTAGAAAAAATACACTTATTTCATGAACAAAGAAA
ACACCCAATGTCAGAAAATAATCAGCTTCAAGCCTTAGTAATAGAAGAGTCCATTGTTTTAAAAAATAACAATGGGCTGG
CAGTAGGAATGTTTTTAAACTTAGAAAATCAATTTTATCTACTACTACCAGGTCCTCCACATGAATTAGAAAAGATGTTT
GAACAAGAAGCAAAACCGTTATTATTAAAACAACTATCAAAAGATACCGTTTTGATGTCAAGAGTTTTACGCTTTTACGG
AATCGGTGAGTCGCGTCTGGTTACGTTGCTTGATGATTTAATTGAAAACCAAGTAAATCCAACACTTGCTTCTTATACTG
GTAAATACGAAGTCAGCTTGCGTTTGACAGCAAATGGAAGCTCCGATACGGATTGTAAAGGGAAACTCGATAATCTAGAA
GCGATGATAAGAGAACGTGTTGGGGACTATATATATGGCTATGGTGACGACACGAGTTTAGTCAAAGTCGTTAGTGAATT
AATAAAAGAGAAAAAGTTAACACTGTCAGCAGCTGAAAGCCTAACAGGTGGGACTTTTCAAAGTATGCTAACAAGTATAT
CTGGCGCCTCTGAATTTTTTGAAGGTGGACTAGTTACTTATAGTAACCGGATAAAAAAAGAACAGCTTAGTATTGACTCT
AAAACGATAGATCAATTTGGTGTTGTTAGTAGTCAGTGTGCGATTGAAATGGCTGAAAATACTAAAAAAATATTTCAATC
GGATATAGGAATTTCATTTACAGGTGTAGCTGGTCCATTAGAACTAGAAAATAAAAAACCAGGTACAGTCTGGATAGGTA
TAGCAGTAAAAAATAAAGAAACGTATGCAAAATGTTTTCATTTTGAAGGCGATAGAAACAAAAATAGAGAACTTTCAGTT
TTATCAGGATTGTATTTAATCTATAGAGATCTATTAAACAAGCAAATCAGCGAAAAAATTTATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.184

97.862

0.511
  cinA Streptococcus mitis SK321

47.743

100

0.477
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.477
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.475
  cinA Streptococcus pneumoniae R6

47.506

100

0.475
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.475
  cinA Streptococcus pneumoniae D39

47.268

100

0.473
  cinA Streptococcus mutans UA159

46.411

99.287

0.461
  cinA Streptococcus suis isolate S10

40.945

90.499

0.371

Multiple sequence alignment