Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLSSQ_RS00890 Genome accession   NZ_CP179682
Coordinates   177438..178460 (+) Length   340 a.a.
NCBI ID   WP_014235817.1    Uniprot ID   -
Organism   Azospira sp. APE16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 172438..183460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSSQ_RS00865 (ACLSSQ_00865) thiL 172642..173613 (+) 972 WP_416243525.1 thiamine-phosphate kinase -
  ACLSSQ_RS00870 (ACLSSQ_00870) - 173603..174109 (+) 507 WP_130459693.1 phosphatidylglycerophosphatase A -
  ACLSSQ_RS00875 (ACLSSQ_00875) - 174106..174621 (+) 516 WP_416243526.1 CinA family protein -
  ACLSSQ_RS00880 (ACLSSQ_00880) bfr 174676..175155 (+) 480 WP_014235819.1 bacterioferritin -
  ACLSSQ_RS00885 (ACLSSQ_00885) - 175220..177301 (-) 2082 WP_416243527.1 PAS domain S-box protein -
  ACLSSQ_RS00890 (ACLSSQ_00890) recA 177438..178460 (+) 1023 WP_014235817.1 recombinase RecA Machinery gene
  ACLSSQ_RS00895 (ACLSSQ_00895) recX 178457..178912 (+) 456 WP_416243528.1 recombination regulator RecX -
  ACLSSQ_RS00900 (ACLSSQ_00900) lptB 178978..179724 (+) 747 WP_014235815.1 LPS export ABC transporter ATP-binding protein -
  ACLSSQ_RS00905 (ACLSSQ_00905) rpoN/rpoN1 179791..181263 (+) 1473 WP_416243529.1 RNA polymerase factor sigma-54 Machinery gene
  ACLSSQ_RS00910 (ACLSSQ_00910) hpf 181278..181598 (+) 321 WP_014235813.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACLSSQ_RS00915 (ACLSSQ_00915) ptsN 181754..182239 (+) 486 WP_416243530.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACLSSQ_RS00920 (ACLSSQ_00920) hprK 182208..183143 (+) 936 WP_014235811.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36092.58 Da        Isoelectric Point: 5.5825

>NTDB_id=1092548 ACLSSQ_RS00890 WP_014235817.1 177438..178460(+) (recA) [Azospira sp. APE16]
MDDNKAKALTAALAQIEKQFGKGAIMKMGETEVDKGVDVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTTLTLQVV
AEMQKLGGTAAFIDAEHALDPQYAQKLGVNIGELLISQPDNGEQALEIADMLVRSGGVDVIVVDSVAALTPKAEIEGEMG
DSMMGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGGIKKGDEVIGN
ETRVKVVKNKVSPPFREALFDILYGEGISREGEIIELGVANKLIEKSGAWYSYKGEKIGQGKDNSREFLKANPAIAQEIE
GKIREALGVANPAPAAAAGE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=1092548 ACLSSQ_RS00890 WP_014235817.1 177438..178460(+) (recA) [Azospira sp. APE16]
ATGGACGACAACAAGGCCAAAGCACTAACCGCCGCACTGGCGCAGATCGAAAAGCAGTTCGGCAAGGGCGCCATCATGAA
GATGGGCGAGACCGAAGTGGACAAGGGCGTGGACGTGGTGTCCACCGGCTCCCTGGGCCTGGACGTGGCCCTCGGCGTGG
GCGGCCTGCCCCGGGGCCGGGTGGTGGAAATATACGGTCCGGAATCTTCCGGCAAGACCACCCTGACCCTGCAGGTCGTC
GCCGAGATGCAGAAGCTGGGCGGCACCGCCGCCTTCATCGACGCGGAACACGCCCTCGATCCCCAGTACGCCCAGAAGCT
GGGCGTGAACATCGGCGAGCTGCTCATCTCCCAGCCGGACAACGGCGAACAGGCCCTGGAAATCGCCGACATGCTGGTGC
GTTCCGGCGGTGTGGACGTGATCGTGGTGGACTCTGTCGCCGCCCTCACCCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GATTCCATGATGGGCCTGCACGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACCGCCAACATCAAGAAGACCAACAC
CCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTCGGTTCCCCGGAAACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCCGTGCGCCTGGATATCCGCCGTATCGGCGGCATCAAGAAGGGTGACGAGGTGATCGGCAAC
GAAACCCGCGTCAAGGTGGTGAAGAACAAGGTCTCCCCGCCCTTCCGCGAAGCCCTGTTCGACATCCTCTACGGCGAAGG
CATCTCCCGCGAGGGCGAGATCATCGAACTGGGGGTGGCCAACAAGCTGATCGAGAAGTCCGGCGCCTGGTACTCCTACA
AGGGCGAGAAAATCGGCCAGGGCAAGGACAACTCCCGGGAATTCCTCAAGGCCAACCCGGCCATTGCCCAGGAAATCGAA
GGCAAGATCCGGGAAGCCCTGGGCGTGGCCAACCCCGCCCCGGCGGCCGCTGCCGGGGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.803

92.353

0.765
  recA Neisseria gonorrhoeae strain FA1090

75.38

96.765

0.729
  recA Neisseria gonorrhoeae MS11

75.38

96.765

0.729
  recA Neisseria gonorrhoeae MS11

75.38

96.765

0.729
  recA Glaesserella parasuis strain SC1401

74.242

97.059

0.721
  recA Pseudomonas stutzeri DSM 10701

73.414

97.353

0.715
  recA Acinetobacter baylyi ADP1

73.394

96.176

0.706
  recA Acinetobacter baumannii D1279779

72.171

96.176

0.694
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.084

97.647

0.694
  recA Vibrio cholerae strain A1552

71.084

97.647

0.694
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.976

97.353

0.662
  recA Bacillus subtilis subsp. subtilis str. 168

65.861

97.353

0.641
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.152

97.059

0.632
  recA Helicobacter pylori 26695

63.526

96.765

0.615
  recA Helicobacter pylori strain NCTC11637

63.526

96.765

0.615
  recA Latilactobacillus sakei subsp. sakei 23K

62.918

96.765

0.609
  recA Streptococcus mutans UA159

61.934

97.353

0.603
  recA Streptococcus mitis SK321

60.417

98.824

0.597
  recA Streptococcus pneumoniae Rx1

61.027

97.353

0.594
  recA Streptococcus mitis NCTC 12261

61.027

97.353

0.594
  recA Streptococcus pneumoniae D39

61.027

97.353

0.594
  recA Streptococcus pneumoniae R6

61.027

97.353

0.594
  recA Streptococcus pneumoniae TIGR4

61.027

97.353

0.594
  recA Lactococcus lactis subsp. cremoris KW2

60.18

98.235

0.591
  recA Streptococcus pyogenes NZ131

60.909

97.059

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.79

96.765

0.588

Multiple sequence alignment