Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACLSSQ_RS00905 Genome accession   NZ_CP179682
Coordinates   179791..181263 (+) Length   490 a.a.
NCBI ID   WP_416243529.1    Uniprot ID   -
Organism   Azospira sp. APE16     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174791..186263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSSQ_RS00885 (ACLSSQ_00885) - 175220..177301 (-) 2082 WP_416243527.1 PAS domain S-box protein -
  ACLSSQ_RS00890 (ACLSSQ_00890) recA 177438..178460 (+) 1023 WP_014235817.1 recombinase RecA Machinery gene
  ACLSSQ_RS00895 (ACLSSQ_00895) recX 178457..178912 (+) 456 WP_416243528.1 recombination regulator RecX -
  ACLSSQ_RS00900 (ACLSSQ_00900) lptB 178978..179724 (+) 747 WP_014235815.1 LPS export ABC transporter ATP-binding protein -
  ACLSSQ_RS00905 (ACLSSQ_00905) rpoN/rpoN1 179791..181263 (+) 1473 WP_416243529.1 RNA polymerase factor sigma-54 Machinery gene
  ACLSSQ_RS00910 (ACLSSQ_00910) hpf 181278..181598 (+) 321 WP_014235813.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACLSSQ_RS00915 (ACLSSQ_00915) ptsN 181754..182239 (+) 486 WP_416243530.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACLSSQ_RS00920 (ACLSSQ_00920) hprK 182208..183143 (+) 936 WP_014235811.1 HPr(Ser) kinase/phosphatase -
  ACLSSQ_RS00925 (ACLSSQ_00925) - 183189..183503 (+) 315 WP_130459698.1 PsiF family protein -
  ACLSSQ_RS00930 (ACLSSQ_00930) - 183628..184299 (+) 672 WP_130459699.1 hypothetical protein -
  ACLSSQ_RS00935 (ACLSSQ_00935) - 184316..185131 (+) 816 WP_130459700.1 hypothetical protein -
  ACLSSQ_RS00940 (ACLSSQ_00940) - 185194..186003 (+) 810 WP_416243531.1 hypothetical protein -

Sequence

Protein


Download         Length: 490 a.a.        Molecular weight: 54917.74 Da        Isoelectric Point: 4.6661

>NTDB_id=1092549 ACLSSQ_RS00905 WP_416243529.1 179791..181263(+) (rpoN/rpoN1) [Azospira sp. APE16]
MKPTLQLKLSQHLALTPQLQQSIRLLQLSTLELEQELEKYLLENPLLEREDENYEPSYSGSEGEYAGSTAEAAAESPGDG
GESSEGADSHGPEEVREEPRDSLGEGEDWFAEGSYPSASRDEDEDSDFQEVQAANTSLRDHLNWQLGLMQLSERDRQLVS
FLIEALDEDGYLTQPLEELQEALPEELEIDLDDLQIALRHLQHLDPTGVGARTPGECLALQLEALPADEVRDQALKLVRH
HLELLAGRDFTKLKKLLGCDDERLRAVTNLVKSLNPRPGAQYAPLDARYITPDVVVKKVRNQWTASINPDAYPRLRINRL
YAEILSKQRGSSLSGQLQEARWLIKNVQQRFDTILRVSQAILDRQRQFFEHGEVAMRPLVLREIAETLGLHESTVSRVTT
QKYMATPRGIFELKYFFGSHVATDTGGACSATAIRALIKQLVAAEDPKKPLSDSQISEILGQQGIVVARRTIAKYREALN
ISPANLRKSI

Nucleotide


Download         Length: 1473 bp        

>NTDB_id=1092549 ACLSSQ_RS00905 WP_416243529.1 179791..181263(+) (rpoN/rpoN1) [Azospira sp. APE16]
ATGAAACCAACCCTCCAACTCAAACTCTCGCAGCACCTGGCCCTGACGCCACAGCTGCAGCAGTCCATCCGGCTGCTGCA
ACTGTCGACGCTCGAGCTGGAGCAGGAGTTGGAGAAGTATCTGCTGGAAAACCCCCTGCTGGAGCGCGAGGACGAGAACT
ACGAGCCCTCCTACAGCGGGAGCGAAGGCGAATACGCCGGCAGCACGGCCGAGGCCGCTGCTGAGAGCCCGGGGGATGGC
GGCGAGTCCAGCGAGGGGGCCGACAGCCACGGTCCCGAGGAAGTGCGGGAAGAGCCCCGGGACAGCCTGGGCGAAGGCGA
GGACTGGTTTGCCGAAGGCAGCTACCCTTCCGCCTCCCGCGACGAGGACGAGGATTCCGACTTCCAGGAAGTGCAGGCCG
CCAACACCTCCCTGCGCGACCACCTCAACTGGCAGCTGGGCCTGATGCAGCTCTCCGAGCGGGACCGGCAGCTGGTCAGC
TTCCTGATCGAGGCGCTGGACGAGGACGGCTACCTGACCCAGCCCCTGGAGGAGCTGCAGGAAGCCCTGCCGGAAGAGCT
GGAAATCGACCTGGACGACCTGCAGATCGCCCTGCGCCACCTGCAGCACCTGGACCCGACCGGTGTCGGCGCCCGCACTC
CGGGCGAATGCCTGGCCCTGCAGCTGGAAGCCCTGCCGGCCGACGAGGTGCGGGACCAGGCCCTGAAGCTGGTGCGCCAT
CACCTGGAACTGCTGGCCGGCCGGGACTTCACCAAGCTGAAGAAGCTGCTGGGCTGCGACGACGAGCGCCTGCGCGCCGT
CACCAACCTGGTAAAGAGCCTCAACCCCCGGCCCGGCGCCCAGTACGCGCCCCTGGATGCCCGCTACATCACCCCGGACG
TGGTGGTGAAGAAGGTGCGCAACCAGTGGACCGCCAGCATCAATCCGGACGCCTACCCGCGCCTGCGCATCAACCGGCTC
TACGCCGAGATCCTCTCCAAGCAGCGCGGCTCCAGCCTCTCCGGCCAGCTGCAGGAGGCCCGCTGGCTGATCAAGAACGT
GCAGCAGCGTTTCGACACCATCCTGCGCGTGTCCCAGGCCATCCTGGACCGCCAGCGCCAGTTCTTCGAACACGGCGAGG
TGGCCATGCGTCCCCTGGTACTGCGGGAAATCGCCGAAACCCTGGGCCTGCACGAATCCACCGTCTCCCGGGTGACCACC
CAGAAATACATGGCCACCCCCCGGGGCATTTTCGAACTCAAGTATTTCTTCGGCAGCCACGTGGCCACGGATACGGGGGG
CGCCTGTTCGGCCACCGCCATCCGGGCCCTGATCAAGCAGCTGGTGGCGGCCGAAGACCCCAAAAAACCCCTTTCGGACA
GTCAAATATCCGAAATTCTTGGCCAACAAGGCATTGTTGTGGCGCGTCGAACCATTGCAAAATACAGAGAAGCGCTCAAC
ATTTCGCCGGCCAACCTACGCAAGTCCATCTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(334-488)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(128-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.455

100

0.59

Multiple sequence alignment