Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACL6ER_RS08160 Genome accession   NZ_CP178717
Coordinates   1637004..1638050 (+) Length   348 a.a.
NCBI ID   WP_003238440.1    Uniprot ID   A0A9W5PD68
Organism   Bacillus inaquosorum strain SY1167     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1632004..1643050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS08130 (ACL6ER_08130) ymfI 1632011..1632739 (+) 729 WP_268279059.1 elongation factor P 5-aminopentanone reductase -
  ACL6ER_RS08135 (ACL6ER_08135) - 1632820..1633077 (+) 258 WP_003238448.1 DUF3243 domain-containing protein -
  ACL6ER_RS08140 (ACL6ER_08140) - 1633207..1633998 (+) 792 WP_003220998.1 DUF3388 domain-containing protein -
  ACL6ER_RS08145 (ACL6ER_08145) rodZ 1634017..1634931 (+) 915 WP_412056909.1 cell shape determination protein RodZ -
  ACL6ER_RS08150 (ACL6ER_08150) pgsA 1634981..1635562 (+) 582 WP_003238444.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACL6ER_RS08155 (ACL6ER_08155) cinA 1635581..1636831 (+) 1251 WP_268299953.1 competence/damage-inducible protein A Machinery gene
  ACL6ER_RS08160 (ACL6ER_08160) recA 1637004..1638050 (+) 1047 WP_003238440.1 recombinase RecA Machinery gene
  ACL6ER_RS08165 (ACL6ER_08165) - 1638218..1639393 (+) 1176 WP_268331475.1 serine hydrolase domain-containing protein -
  ACL6ER_RS08170 (ACL6ER_08170) rny 1639669..1641231 (+) 1563 WP_003221010.1 ribonuclease Y -
  ACL6ER_RS08175 (ACL6ER_08175) ymdB 1641301..1642095 (+) 795 WP_268331473.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  ACL6ER_RS08180 (ACL6ER_08180) spoVS 1642295..1642555 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38052.22 Da        Isoelectric Point: 4.7904

>NTDB_id=1090841 ACL6ER_RS08160 WP_003238440.1 1637004..1638050(+) (recA) [Bacillus inaquosorum strain SY1167]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNHGVVQQQAEEAQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1090841 ACL6ER_RS08160 WP_003238440.1 1637004..1638050(+) (recA) [Bacillus inaquosorum strain SY1167]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGTAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACGGCACTGGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTTGCGCTCCATGCGATTGCTGAG
GTTCAGCAGCAAGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAGAAGCTCGGAGT
CAACATCGAAGAGCTCTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCGCTGGTTCGAAGCG
GTGCAGTTGACATTGTCGTAGTCGACTCTGTGGCGGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCA
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAAACAACTCCTGGCGGCCGCGCGCTGA
AATTCTACTCTTCCGTGCGTCTCGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTAAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATCTC
AAAAGAGGGCGAAATCATTGATCTTGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATTCAGGAGCAA
ATTCGTGAACATTACGGCTTGGATAATCACGGCGTAGTGCAGCAGCAAGCTGAAGAGGCACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

99.425

100

0.994
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

93.966

0.704
  recA Streptococcus pneumoniae R6

66.477

100

0.672
  recA Streptococcus pneumoniae TIGR4

66.477

100

0.672
  recA Streptococcus pneumoniae Rx1

66.477

100

0.672
  recA Streptococcus pneumoniae D39

66.477

100

0.672
  recA Streptococcus mutans UA159

65.903

100

0.661
  recA Streptococcus mitis NCTC 12261

66.86

98.851

0.661
  recA Streptococcus mitis SK321

68.485

94.828

0.649
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

62.791

98.851

0.621
  recA Helicobacter pylori strain NCTC11637

62.791

98.851

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.046

94.54

0.615
  recA Neisseria gonorrhoeae MS11

65.046

94.54

0.615
  recA Neisseria gonorrhoeae MS11

65.046

94.54

0.615
  recA Ralstonia pseudosolanacearum GMI1000

64.742

94.54

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.561

99.425

0.612
  recA Vibrio cholerae strain A1552

61.561

99.425

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Glaesserella parasuis strain SC1401

60.29

99.138

0.598
  recA Acinetobacter baumannii D1279779

60.947

97.126

0.592
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Acinetobacter baylyi ADP1

62.422

92.529

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563

Multiple sequence alignment