Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACL6ER_RS08155 Genome accession   NZ_CP178717
Coordinates   1635581..1636831 (+) Length   416 a.a.
NCBI ID   WP_268299953.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SY1167     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1630581..1641831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS08125 (ACL6ER_08125) yfmH 1630670..1631956 (+) 1287 WP_003238452.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACL6ER_RS08130 (ACL6ER_08130) ymfI 1632011..1632739 (+) 729 WP_268279059.1 elongation factor P 5-aminopentanone reductase -
  ACL6ER_RS08135 (ACL6ER_08135) - 1632820..1633077 (+) 258 WP_003238448.1 DUF3243 domain-containing protein -
  ACL6ER_RS08140 (ACL6ER_08140) - 1633207..1633998 (+) 792 WP_003220998.1 DUF3388 domain-containing protein -
  ACL6ER_RS08145 (ACL6ER_08145) rodZ 1634017..1634931 (+) 915 WP_412056909.1 cell shape determination protein RodZ -
  ACL6ER_RS08150 (ACL6ER_08150) pgsA 1634981..1635562 (+) 582 WP_003238444.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACL6ER_RS08155 (ACL6ER_08155) cinA 1635581..1636831 (+) 1251 WP_268299953.1 competence/damage-inducible protein A Machinery gene
  ACL6ER_RS08160 (ACL6ER_08160) recA 1637004..1638050 (+) 1047 WP_003238440.1 recombinase RecA Machinery gene
  ACL6ER_RS08165 (ACL6ER_08165) - 1638218..1639393 (+) 1176 WP_268331475.1 serine hydrolase domain-containing protein -
  ACL6ER_RS08170 (ACL6ER_08170) rny 1639669..1641231 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45542.91 Da        Isoelectric Point: 5.3834

>NTDB_id=1090840 ACL6ER_RS08155 WP_268299953.1 1635581..1636831(+) (cinA) [Bacillus inaquosorum strain SY1167]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHTDEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITISAAESFTGGLFSEWLTDLSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1090840 ACL6ER_RS08155 WP_268299953.1 1635581..1636831(+) (cinA) [Bacillus inaquosorum strain SY1167]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTGTTGCTTGGCCAGATCGCAAATACAAATGCTCA
ATTTATCAGTAAACAGCTCGCTGAGATCGGAGTTAACGTATTTTATCATACAGCAGTCGGAGATAATCCGGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAACGCGCTGGGACGTCCGCTCGTATTAAATGATGAAGCGTTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGCAAACAGGCGCTTGTGATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTCACAGAACATGAATCGCGCTTTTATATGCTTCTTCCTGGGCCGCCAAGCGAGTTG
CGTCCAATGTTTGAAAATGAAGCAAAGCCTCTTCTGCTGAAAAAGATGGGCTCAAATGAAAAAATTGTTTCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGATTTGGAAGACATTATTGATGCACAAACGAACCCGACAATCG
CTCCTTTGGCGGCTGACGGAGAGGTGACGCTGCGACTGACAGCCAAACATACTGACGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCTGTTATCTTAGAACGAGTCGGTGAATTTTTCTATGGCTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAGGCATTACGATTTCCGCGGCGGAAAGTTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAAAATTATTTGCCGGCGGCGTCGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGC
GTCAAGAAGGAAACATTAGATCGTTTTGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGCAGCGACATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATCGGCATTTCAGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGA
GGCGCTAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

98.558

100

0.986
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.645

90.625

0.377

Multiple sequence alignment