Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AACH39_RS00775 Genome accession   NZ_AP029060
Coordinates   176045..177100 (-) Length   351 a.a.
NCBI ID   WP_215776737.1    Uniprot ID   -
Organism   Paludibacterium sp. THUN1379     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 171045..182100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH39_RS00765 (THUN1379_01470) alaS 172849..175482 (-) 2634 WP_215776743.1 alanine--tRNA ligase -
  AACH39_RS00770 (THUN1379_01480) recX 175601..176041 (-) 441 WP_215776739.1 recombination regulator RecX -
  AACH39_RS00775 (THUN1379_01490) recA 176045..177100 (-) 1056 WP_215776737.1 recombinase RecA Machinery gene
  AACH39_RS00780 (THUN1379_01500) hrcA 177384..178406 (+) 1023 WP_215776735.1 heat-inducible transcriptional repressor HrcA -
  AACH39_RS00785 (THUN1379_01510) mltB 178438..179445 (+) 1008 WP_215776732.1 lytic murein transglycosylase B -
  AACH39_RS00790 (THUN1379_01520) dnaX 179500..181446 (+) 1947 WP_338620693.1 DNA polymerase III subunit gamma/tau -
  AACH39_RS00795 (THUN1379_01530) - 181450..181788 (+) 339 WP_215776728.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37902.35 Da        Isoelectric Point: 4.9744

>NTDB_id=108339 AACH39_RS00775 WP_215776737.1 176045..177100(-) (recA) [Paludibacterium sp. THUN1379]
MAERTEDKSRALAAALAQIEKQFGKGSIMRMSDNQITENLQVISTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLCL
QVVAEAQKLGGTCAYIDAENALDPVYAQKLGVKVEDLLISQPDTGEQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEG
EMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGGIKKGEEV
VGNETRVKVVKNKVSPPFKQAEFDILYGEGISREGEIIEMGVQHGFIEKSGAWYSHNGQKIGQGKDNVREFLKENPAIAQ
DIERKVRETVGVTIAMSEDGGDPETLEDSVL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=108339 AACH39_RS00775 WP_215776737.1 176045..177100(-) (recA) [Paludibacterium sp. THUN1379]
ATGGCAGAGCGTACCGAAGACAAGAGCCGCGCCCTGGCGGCCGCCCTTGCCCAGATCGAGAAGCAGTTCGGCAAGGGCTC
GATCATGCGCATGAGCGACAACCAGATTACCGAAAACCTGCAGGTGATTTCCACCGGCTCGCTGGGTCTGGATCTGGCAC
TCGGCGTGGGCGGTCTGCCGCGTGGCCGTGTGGTCGAAATCTACGGTCCGGAATCCTCCGGCAAGACCACCCTGTGCCTG
CAGGTGGTCGCCGAGGCACAGAAACTGGGTGGCACCTGCGCCTATATCGATGCCGAAAACGCCCTCGACCCGGTTTATGC
CCAGAAGCTGGGCGTCAAGGTGGAAGATCTGCTGATCTCGCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCTGCGACA
TGCTGGTCCGTTCCAGCGGCGTCGACGTCATCGTGGTCGACTCGGTCGCCGCACTGGTGCCGAAGGCTGAAATCGAAGGC
GAGATGGGTGATTCGCACGTGGGTCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCG
CACCAACACGCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCAACCCGGAAACCACCACCG
GCGGCAATGCGCTCAAGTTCTATGCTTCGGTCCGTCTCGACATCCGCCGTATCGGCGGCATCAAGAAGGGCGAGGAAGTG
GTCGGCAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTCTCGCCGCCGTTCAAGCAGGCCGAATTCGACATCCTTTA
CGGCGAAGGCATCTCGCGTGAAGGGGAAATCATCGAAATGGGCGTGCAACACGGCTTCATCGAGAAATCGGGTGCCTGGT
ACAGCCATAACGGCCAGAAGATCGGTCAGGGCAAGGACAATGTGCGCGAATTCCTCAAGGAAAACCCGGCCATCGCCCAG
GACATCGAGCGCAAGGTACGTGAAACCGTGGGGGTCACCATCGCCATGAGCGAAGATGGTGGCGATCCGGAAACGCTGGA
AGACAGCGTGCTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

76.59

98.575

0.755
  recA Neisseria gonorrhoeae strain FA1090

76.59

98.575

0.755
  recA Neisseria gonorrhoeae MS11

76.59

98.575

0.755
  recA Ralstonia pseudosolanacearum GMI1000

80.952

89.744

0.726
  recA Pseudomonas stutzeri DSM 10701

72.965

98.006

0.715
  recA Glaesserella parasuis strain SC1401

68.571

99.715

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.615

92.593

0.672
  recA Vibrio cholerae strain A1552

72.615

92.593

0.672
  recA Acinetobacter baumannii D1279779

67.241

99.145

0.667
  recA Acinetobacter baylyi ADP1

66.474

98.575

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.329

93.447

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.611

96.011

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

64.11

92.877

0.595
  recA Helicobacter pylori 26695

63.609

93.162

0.593
  recA Helicobacter pylori strain NCTC11637

63.609

93.162

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

61.976

95.157

0.59
  recA Streptococcus mutans UA159

60.121

94.302

0.567
  recA Streptococcus pneumoniae Rx1

59.091

94.017

0.556
  recA Streptococcus pneumoniae D39

59.091

94.017

0.556
  recA Streptococcus pneumoniae R6

59.091

94.017

0.556
  recA Streptococcus pneumoniae TIGR4

59.091

94.017

0.556
  recA Streptococcus mitis NCTC 12261

58.788

94.017

0.553
  recA Streptococcus pyogenes NZ131

58.485

94.017

0.55
  recA Streptococcus mitis SK321

58.485

94.017

0.55
  recA Lactococcus lactis subsp. cremoris KW2

58.485

94.017

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.133

92.023

0.544

Multiple sequence alignment