Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLIN2_RS17565 Genome accession   NZ_CP176856
Coordinates   3478086..3479144 (-) Length   352 a.a.
NCBI ID   WP_092266736.1    Uniprot ID   -
Organism   Brevibacillus centrosporus strain MPB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3473086..3484144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIN2_RS17540 (ACLIN2_17540) - 3473141..3474079 (-) 939 WP_411501708.1 dipeptidase -
  ACLIN2_RS17545 (ACLIN2_17545) spoVS 3474190..3474450 (-) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  ACLIN2_RS17550 (ACLIN2_17550) - 3474568..3475362 (-) 795 WP_122959440.1 TIGR00282 family metallophosphoesterase -
  ACLIN2_RS17555 (ACLIN2_17555) rny 3475511..3477052 (-) 1542 WP_092266738.1 ribonuclease Y -
  ACLIN2_RS17560 (ACLIN2_17560) - 3477337..3477978 (-) 642 WP_411501709.1 RecX family transcriptional regulator -
  ACLIN2_RS17565 (ACLIN2_17565) recA 3478086..3479144 (-) 1059 WP_092266736.1 recombinase RecA Machinery gene
  ACLIN2_RS17570 (ACLIN2_17570) - 3479316..3480905 (-) 1590 WP_092266735.1 DEAD/DEAH box helicase -
  ACLIN2_RS17575 (ACLIN2_17575) cinA 3480913..3482157 (-) 1245 WP_411501710.1 competence/damage-inducible protein A Machinery gene
  ACLIN2_RS17580 (ACLIN2_17580) pgsA 3482265..3482840 (-) 576 WP_092266733.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37796.06 Da        Isoelectric Point: 4.9042

>NTDB_id=1083292 ACLIN2_RS17565 WP_092266736.1 3478086..3479144(-) (recA) [Brevibacillus centrosporus strain MPB16]
MSDRRAALESALRQIEKQFGKGSIMKLGEVSNVQISTTSSGALALDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIAE
VQKQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQGRENSKIYLKENPHVAAQIETK
VREYFSLNPGSIPEAEAVIDPEQEEEPAFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1083292 ACLIN2_RS17565 WP_092266736.1 3478086..3479144(-) (recA) [Brevibacillus centrosporus strain MPB16]
TTGTCAGATCGTCGCGCAGCTTTGGAAAGTGCTTTGCGTCAAATAGAGAAACAGTTCGGAAAAGGGTCCATTATGAAGTT
GGGAGAGGTATCCAACGTTCAAATTTCCACTACCTCCAGTGGTGCGCTTGCGCTTGATATCGCACTTGGGGTTGGCGGCT
TCCCACGTGGCCGTATTGTTGAAATCTACGGTCCAGAGTCTTCCGGTAAAACAACCGTAGCACTCCACGCTATTGCGGAA
GTACAAAAGCAGGGTGGACAAGCTGCGTTTATCGATGCGGAGCACGCATTGGATCCTGTATACGCTGCTAAGCTGGGAGT
CAATATCGATGAGCTCCTGCTGTCTCAGCCTGACACAGGTGAGCAAGCACTGGAAATCGCAGAAGCATTGGTGCGCTCTG
GCGCTGTAGATATTATCGTAGTAGACTCAGTAGCTGCATTGGTACCGAAAGCAGAGATCGAGGGCGAGATGGGAGATTCC
CACGTTGGTTTGCAGGCTCGTCTGATGTCTCAGGCTCTGCGCAAACTGTCCGGTGCGATCAACAAGTCCAAAACGATTGC
CATCTTCATTAACCAGCTGCGTGAAAAAGTGGGCGTCATGTTCGGTAACCCGGAGACAACTCCAGGTGGACGTGCCCTCA
AGTTCTACGCGAGCGTGCGTCTGGATGTGCGTAAAGCTGAGTCCATCAAGGTAGGCAACGATATCCTTGGTAGCAAAACG
AAGATCAAGGTCGTAAAAAATAAAGTAGCTCCTCCGTTCAAGGTAGCGGAAGTAGACATCATGTACGGTGAAGGTATCTC
CAGAGAGGGCAGCATCCTCGACATTGGCTCGGAAATCGATGTGGTACAGAAGAGCGGGGCTTGGTACTCCTTTAACGAAG
AGCGTCTCGGCCAAGGCCGTGAAAATTCAAAGATCTACTTGAAAGAAAATCCACATGTTGCTGCTCAAATCGAAACAAAA
GTGCGTGAGTATTTCAGTCTCAATCCAGGTTCCATTCCGGAAGCGGAAGCAGTCATCGATCCTGAGCAAGAGGAAGAACC
AGCTTTTGATTTAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.402

93.182

0.759
  recA Latilactobacillus sakei subsp. sakei 23K

70.93

97.727

0.693
  recA Streptococcus pyogenes NZ131

67.232

100

0.676
  recA Streptococcus mitis SK321

69.97

94.602

0.662
  recA Streptococcus pneumoniae TIGR4

69.369

94.602

0.656
  recA Streptococcus pneumoniae D39

69.369

94.602

0.656
  recA Streptococcus mitis NCTC 12261

69.369

94.602

0.656
  recA Streptococcus pneumoniae Rx1

69.369

94.602

0.656
  recA Streptococcus pneumoniae R6

69.369

94.602

0.656
  recA Lactococcus lactis subsp. cremoris KW2

69.394

93.75

0.651
  recA Streptococcus mutans UA159

68.693

93.466

0.642
  recA Ralstonia pseudosolanacearum GMI1000

66.769

92.33

0.616
  recA Neisseria gonorrhoeae MS11

62.428

98.295

0.614
  recA Neisseria gonorrhoeae MS11

62.428

98.295

0.614
  recA Neisseria gonorrhoeae strain FA1090

62.428

98.295

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.443

92.898

0.608
  recA Vibrio cholerae strain A1552

65.443

92.898

0.608
  recA Acinetobacter baylyi ADP1

60.92

98.864

0.602
  recA Glaesserella parasuis strain SC1401

63.473

94.886

0.602
  recA Acinetobacter baumannii D1279779

60.571

99.432

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.756

97.727

0.594
  recA Pseudomonas stutzeri DSM 10701

60.641

97.443

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

92.898

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

90.909

0.568
  recA Helicobacter pylori 26695

59.639

94.318

0.563
  recA Helicobacter pylori strain NCTC11637

59.337

94.318

0.56

Multiple sequence alignment