Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACLIN2_RS17575 Genome accession   NZ_CP176856
Coordinates   3480913..3482157 (-) Length   414 a.a.
NCBI ID   WP_411501710.1    Uniprot ID   -
Organism   Brevibacillus centrosporus strain MPB16     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3475913..3487157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIN2_RS17560 (ACLIN2_17560) - 3477337..3477978 (-) 642 WP_411501709.1 RecX family transcriptional regulator -
  ACLIN2_RS17565 (ACLIN2_17565) recA 3478086..3479144 (-) 1059 WP_092266736.1 recombinase RecA Machinery gene
  ACLIN2_RS17570 (ACLIN2_17570) - 3479316..3480905 (-) 1590 WP_092266735.1 DEAD/DEAH box helicase -
  ACLIN2_RS17575 (ACLIN2_17575) cinA 3480913..3482157 (-) 1245 WP_411501710.1 competence/damage-inducible protein A Machinery gene
  ACLIN2_RS17580 (ACLIN2_17580) pgsA 3482265..3482840 (-) 576 WP_092266733.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLIN2_RS17585 (ACLIN2_17585) rimO 3482841..3484187 (-) 1347 WP_411501711.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACLIN2_RS17590 (ACLIN2_17590) - 3484299..3485198 (-) 900 WP_092266731.1 helix-turn-helix domain-containing protein -
  ACLIN2_RS17595 (ACLIN2_17595) - 3485211..3485990 (-) 780 WP_092266730.1 YmfK family protein -
  ACLIN2_RS17600 (ACLIN2_17600) - 3486097..3486366 (-) 270 WP_092266729.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44801.28 Da        Isoelectric Point: 4.9128

>NTDB_id=1083293 ACLIN2_RS17575 WP_411501710.1 3480913..3482157(-) (cinA) [Brevibacillus centrosporus strain MPB16]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAQIGVGVYFHTVVGDNSERLLQVIRLAAERSDLVIFSGGLGPTQDDLTKET
VAAYVGVDLVTDANAMKYIEDFFTQRGIVMTENNRKQALVLAGSHVLPNDFGMAPGMAIRHDSTTFVLLPGPPSELYPMV
DRYVMPYLIDLLPEKQVFHSRVFRFYGIGESALEERLLDLIEKQDNPTIAPYAKEFEVTLRVTARAATAEAGEALILPVE
KEIRDRVGQYIYGTGEDSSLHEVLINELRKRGESIACAESCTGGTVASLITSVPGSSSVFRGGIVCYTNEVKNQVLGVSE
EVLATEGAVSEQTAKLLAENVREKLGTTYGVSVTGVAGPDSSEGKPVGLVYVGIAAEGLPTVVKELRLAGRRQAIVGRAA
KFALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1083293 ACLIN2_RS17575 WP_411501710.1 3480913..3482157(-) (cinA) [Brevibacillus centrosporus strain MPB16]
ATGAGAGCGGAGATTATCGCGGTAGGGACGGAGCTGCTTCTAGGGCAAATCGCCAACACAAACGCACAGTTTCTTTCTCA
AAAGCTGGCGCAGATTGGTGTCGGGGTCTATTTTCATACGGTAGTGGGAGATAATTCGGAGCGGCTGCTGCAAGTTATTC
GCCTGGCAGCAGAACGCTCCGATCTGGTTATCTTCTCTGGAGGGCTTGGACCGACGCAGGACGATCTGACCAAAGAGACA
GTAGCTGCATACGTTGGTGTAGATTTGGTTACGGATGCAAACGCCATGAAGTACATCGAGGATTTCTTTACACAACGTGG
CATTGTCATGACGGAGAACAACCGAAAGCAGGCTCTCGTTTTGGCTGGGAGCCATGTCCTTCCCAACGATTTCGGAATGG
CGCCGGGTATGGCGATCCGTCATGACAGTACTACGTTCGTATTGCTTCCTGGTCCGCCAAGCGAATTGTATCCGATGGTT
GATCGCTATGTAATGCCCTATCTGATCGATTTGCTGCCTGAAAAACAGGTGTTTCACTCGCGCGTATTCCGTTTTTACGG
GATTGGGGAATCAGCTTTGGAAGAACGCCTGCTGGACTTGATTGAAAAGCAGGACAACCCGACCATCGCTCCGTATGCCA
AGGAGTTTGAAGTGACTCTGCGCGTTACAGCGAGAGCGGCGACTGCTGAAGCAGGGGAAGCGCTCATATTGCCTGTTGAA
AAAGAGATCAGGGATCGTGTGGGACAGTACATTTACGGCACGGGGGAGGATTCCTCCCTGCATGAGGTGCTGATAAATGA
ACTTAGGAAAAGAGGGGAGAGCATTGCTTGTGCGGAAAGCTGCACAGGTGGTACCGTTGCTTCTTTGATTACCTCTGTTC
CGGGGAGTTCCTCTGTCTTTCGCGGTGGGATTGTCTGCTACACCAACGAAGTGAAGAATCAAGTGCTTGGAGTATCAGAA
GAAGTGCTGGCAACAGAGGGAGCCGTCAGCGAACAAACGGCGAAGCTGCTGGCAGAAAATGTACGTGAAAAGCTGGGAAC
CACTTATGGGGTCTCGGTAACGGGCGTAGCTGGCCCGGATTCCTCGGAAGGAAAGCCTGTCGGGCTGGTCTACGTAGGAA
TTGCGGCGGAAGGCTTGCCTACGGTGGTGAAAGAGCTGCGACTGGCGGGAAGAAGGCAGGCTATCGTTGGCCGTGCTGCC
AAATTCGCGCTGTTCTACGCGCTTCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(259-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.574

99.758

0.514
  cinA Streptococcus mitis SK321

46.489

99.758

0.464
  cinA Streptococcus mitis NCTC 12261

46.489

99.758

0.464
  cinA Streptococcus pneumoniae TIGR4

46.489

99.758

0.464
  cinA Streptococcus pneumoniae Rx1

46.005

99.758

0.459
  cinA Streptococcus pneumoniae R6

46.005

99.758

0.459
  cinA Streptococcus pneumoniae D39

45.763

99.758

0.457
  cinA Streptococcus mutans UA159

45.614

96.377

0.44
  cinA Streptococcus suis isolate S10

41.266

95.411

0.394

Multiple sequence alignment