Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACKVEV_RS00535 Genome accession   NZ_CP176417
Coordinates   105561..106625 (+) Length   354 a.a.
NCBI ID   WP_173477690.1    Uniprot ID   -
Organism   Lysinibacillus sp. 38-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100561..111625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVEV_RS00510 - 101193..101450 (+) 258 WP_402924665.1 DUF3243 domain-containing protein -
  ACKVEV_RS00515 - 101677..102465 (+) 789 WP_409368424.1 DUF3388 domain-containing protein -
  ACKVEV_RS00520 - 102482..103405 (+) 924 WP_409368425.1 helix-turn-helix domain-containing protein -
  ACKVEV_RS00525 pgsA 103453..104031 (+) 579 WP_409368426.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACKVEV_RS00530 cinA 104049..105308 (+) 1260 WP_409368427.1 competence/damage-inducible protein A Machinery gene
  ACKVEV_RS00535 recA 105561..106625 (+) 1065 WP_173477690.1 recombinase RecA Machinery gene
  ACKVEV_RS00540 rny 107310..108869 (+) 1560 WP_402924653.1 ribonuclease Y -
  ACKVEV_RS00545 - 109178..109861 (+) 684 WP_409368428.1 YveK family protein -
  ACKVEV_RS00550 - 109904..110611 (+) 708 WP_409368430.1 CpsD/CapB family tyrosine-protein kinase -
  ACKVEV_RS00555 - 110640..111419 (+) 780 WP_409368431.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38230.51 Da        Isoelectric Point: 4.7918

>NTDB_id=1080003 ACKVEV_RS00535 WP_173477690.1 105561..106625(+) (recA) [Lysinibacillus sp. 38-6]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLEEIANK
IRSSYGIAAQSYTIAAHDDEEMDEELMLLLEDEK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1080003 ACKVEV_RS00535 WP_173477690.1 105561..106625(+) (recA) [Lysinibacillus sp. 38-6]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGTTAAAACAAATTGAAAAGAATTTCGGTAAAGGCTCTATTATGAAGCT
AGGCGAAAAAACAGATTTAGAAATTGCTACGTCTTCTAGTGGTTCGTTAGCGCTTGATGCAGCATTAGGTGTTGGTGGCT
ATCCACGTGGACGTATTATTGAAGTATACGGTCCAGAGTCATCAGGTAAAACAACAGTAGCATTACATGCCATTGCGGAA
GTACAAGCAAAAGGTGGACAAGCTGCATTTATCGATGCTGAGCATGCATTAGACCCGATTTATGCTCAAAAATTAGGCGT
AAATATTGATGAACTGTTATTATCACAACCAGACACGGGTGAGCAGGCGCTTGAAATTGCAGAAGCATTAGTGCGCAGTG
GTGCAATTGATATTATCGTTATTGACTCTGTTGCAGCACTCGTACCAAAAGCTGAAATCGAAGGCGATATGGGTGACTCT
CACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCATTACGTAAGCTTTCAGGTGCTATAAATAAATCCAAAACAATCGC
TATTTTCATTAACCAAATCCGTGAAAAAATTGGTGTTATGTTCGGTAACCCAGAAACAACGCCTGGTGGTCGTGCGTTAA
AATTCTATAGTTCAGTACGTTTAGAAGTACGTCGTGCAGAAGCGATCAAACAAGGTAATGACATTATGGGTAACCGTACG
AAAATTAAAATTGTGAAAAATAAAGTAGCACCACCATTCCGTACAGCTGAAGTTGATATTATGTATGGTGAAGGGATTTC
AAAAGAGGGCGAAACGGTCGATTTAGGTGTAGAATTAGATATCGTTCAAAAAAGCGGATCTTGGTATGCTTACGGCGATG
AGCGTCTTGGCCAAGGACGTGAAAACGCAAAACAATATTTAAAAGAAAATCCTGCTGTTTTAGAGGAAATTGCCAATAAA
ATTCGTTCTTCTTACGGCATTGCCGCACAATCGTATACAATTGCTGCACATGATGACGAGGAAATGGATGAAGAGTTAAT
GCTTCTTCTTGAAGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.85

92.373

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

75.767

92.09

0.698
  recA Streptococcus mitis SK321

64.82

100

0.661
  recA Streptococcus mitis NCTC 12261

64.543

100

0.658
  recA Streptococcus mutans UA159

63.611

100

0.647
  recA Streptococcus pneumoniae R6

68.182

93.22

0.636
  recA Streptococcus pneumoniae Rx1

68.182

93.22

0.636
  recA Streptococcus pneumoniae D39

68.182

93.22

0.636
  recA Streptococcus pneumoniae TIGR4

68.182

93.22

0.636
  recA Streptococcus pyogenes NZ131

67.683

92.655

0.627
  recA Lactococcus lactis subsp. cremoris KW2

66.667

93.22

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.653

92.938

0.61
  recA Neisseria gonorrhoeae MS11

65.653

92.938

0.61
  recA Neisseria gonorrhoeae MS11

65.653

92.938

0.61
  recA Helicobacter pylori strain NCTC11637

62.573

96.61

0.605
  recA Acinetobacter baylyi ADP1

61.494

98.305

0.605
  recA Helicobacter pylori 26695

62.281

96.61

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

96.893

0.602
  recA Acinetobacter baumannii D1279779

60.458

98.588

0.596
  recA Glaesserella parasuis strain SC1401

60.172

98.588

0.593
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.373

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.09

0.588
  recA Vibrio cholerae strain A1552

63.75

90.395

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.395

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571
  recA Pseudomonas stutzeri DSM 10701

62.928

90.678

0.571

Multiple sequence alignment