Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACKVEV_RS00530 Genome accession   NZ_CP176417
Coordinates   104049..105308 (+) Length   419 a.a.
NCBI ID   WP_409368427.1    Uniprot ID   -
Organism   Lysinibacillus sp. 38-6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 99049..110308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVEV_RS00500 yfmH 99120..100418 (+) 1299 WP_409368422.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACKVEV_RS00505 ymfI 100418..101146 (+) 729 WP_409368423.1 elongation factor P 5-aminopentanone reductase -
  ACKVEV_RS00510 - 101193..101450 (+) 258 WP_402924665.1 DUF3243 domain-containing protein -
  ACKVEV_RS00515 - 101677..102465 (+) 789 WP_409368424.1 DUF3388 domain-containing protein -
  ACKVEV_RS00520 - 102482..103405 (+) 924 WP_409368425.1 helix-turn-helix domain-containing protein -
  ACKVEV_RS00525 pgsA 103453..104031 (+) 579 WP_409368426.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACKVEV_RS00530 cinA 104049..105308 (+) 1260 WP_409368427.1 competence/damage-inducible protein A Machinery gene
  ACKVEV_RS00535 recA 105561..106625 (+) 1065 WP_173477690.1 recombinase RecA Machinery gene
  ACKVEV_RS00540 rny 107310..108869 (+) 1560 WP_402924653.1 ribonuclease Y -
  ACKVEV_RS00545 - 109178..109861 (+) 684 WP_409368428.1 YveK family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45198.75 Da        Isoelectric Point: 5.2748

>NTDB_id=1080002 ACKVEV_RS00530 WP_409368427.1 104049..105308(+) (cinA) [Lysinibacillus sp. 38-6]
MNAEILAVGSELLLGQISNTNAKFISNQLSELGINVFYHTVVGDNAKRLEQAISIAESRADLIIFSGGLGPTKDDLTKET
IARHLGLDLVIDQVALSYIEQFFAKRGIAMTDNNRKQALVLAGSEVLANHHGMAPGMILTKDQHTYILLPGPPKELEPMF
QFEAKPKLGTMLNDGGVIVSHVMRFYGIGEAELEVRVQDILDKQTNPTVAPLAADGEVTLRVTAKAQSEQEAQQLIDAKV
AEIRAIVGDFQYGINDDSLASKTVEMLQDNNLTISAAESLTAGLFQSELAEIPGVGSALIGGVVTYTEDAKVKQLGIPQQ
LLDKHGIVSSECAAAMASAVREKFGTSIGIGLTGAAGPTAHDHQPVGTVWIGMAIGDEEPITYLLHLSGMRNTNRLRAVK
FTLHYLMQQLAERGYKKRF

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1080002 ACKVEV_RS00530 WP_409368427.1 104049..105308(+) (cinA) [Lysinibacillus sp. 38-6]
ATGAATGCTGAAATCCTTGCAGTCGGCTCAGAGTTATTACTTGGACAGATATCCAATACAAATGCAAAGTTTATTTCCAA
TCAGCTTTCTGAGTTAGGAATTAACGTGTTTTATCATACTGTTGTTGGCGATAATGCAAAACGCTTAGAACAGGCCATTA
GCATAGCGGAATCTCGCGCAGATCTTATCATTTTTTCAGGTGGTTTAGGACCTACAAAAGATGATTTGACGAAAGAGACA
ATTGCGCGTCATCTTGGTCTGGATCTTGTCATCGATCAAGTTGCATTAAGTTACATTGAGCAATTTTTTGCAAAAAGAGG
CATCGCCATGACGGATAATAACCGTAAACAGGCGCTTGTATTAGCAGGTAGCGAGGTGCTCGCAAATCATCATGGTATGG
CGCCAGGGATGATTTTGACTAAGGATCAGCATACCTACATATTACTCCCAGGCCCACCAAAAGAATTGGAGCCGATGTTC
CAATTTGAAGCAAAGCCAAAGCTTGGCACAATGCTAAATGATGGCGGCGTCATCGTGTCCCACGTCATGCGCTTTTATGG
CATTGGAGAAGCGGAGTTAGAAGTGCGTGTGCAAGATATTTTAGATAAACAAACAAATCCAACAGTTGCACCGTTAGCGG
CTGATGGAGAAGTAACTTTACGTGTTACGGCAAAGGCTCAATCTGAGCAGGAAGCCCAACAGCTTATTGATGCAAAAGTG
GCGGAAATTCGCGCCATTGTTGGAGATTTCCAATATGGTATAAATGACGATTCGCTTGCTTCAAAAACGGTAGAAATGTT
GCAAGACAATAATTTAACGATTTCTGCGGCAGAAAGTTTAACAGCAGGCTTATTTCAATCGGAGCTTGCAGAGATACCAG
GCGTAGGCAGCGCCCTTATAGGAGGCGTCGTAACCTATACGGAAGATGCCAAAGTAAAACAGCTTGGTATCCCGCAGCAA
TTATTAGATAAACATGGAATTGTCAGCAGTGAATGTGCTGCTGCAATGGCAAGCGCGGTGCGTGAAAAATTCGGTACATC
GATTGGTATTGGCTTAACGGGAGCGGCTGGTCCTACAGCGCATGACCATCAGCCTGTTGGTACAGTATGGATTGGCATGG
CGATAGGTGACGAAGAGCCAATAACGTATTTATTGCATTTATCTGGTATGCGCAATACCAATCGTTTACGTGCGGTTAAA
TTTACGTTGCATTATTTAATGCAGCAATTAGCAGAACGAGGATATAAGAAACGCTTTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.311

98.091

0.513
  cinA Streptococcus mitis SK321

46.997

91.408

0.43
  cinA Streptococcus pneumoniae TIGR4

46.997

91.408

0.43
  cinA Streptococcus pneumoniae Rx1

46.997

91.408

0.43
  cinA Streptococcus pneumoniae R6

46.997

91.408

0.43
  cinA Streptococcus pneumoniae D39

46.736

91.408

0.427
  cinA Streptococcus mitis NCTC 12261

46.475

91.408

0.425
  cinA Streptococcus mutans UA159

44.709

90.215

0.403

Multiple sequence alignment