Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACKKE8_RS17985 Genome accession   NZ_CP176370
Coordinates   3656241..3657299 (-) Length   352 a.a.
NCBI ID   WP_409174271.1    Uniprot ID   -
Organism   Brevibacillus fortis strain LJQJ21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3651241..3662299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKKE8_RS17960 (ACKKE8_17960) - 3651385..3652323 (-) 939 WP_409174268.1 dipeptidase -
  ACKKE8_RS17965 (ACKKE8_17965) spoVS 3652432..3652692 (-) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  ACKKE8_RS17970 (ACKKE8_17970) - 3652811..3653605 (-) 795 WP_048033391.1 TIGR00282 family metallophosphoesterase -
  ACKKE8_RS17975 (ACKKE8_17975) rny 3653715..3655256 (-) 1542 WP_409174269.1 ribonuclease Y -
  ACKKE8_RS17980 (ACKKE8_17980) - 3655530..3656171 (-) 642 WP_409174270.1 RecX family transcriptional regulator -
  ACKKE8_RS17985 (ACKKE8_17985) recA 3656241..3657299 (-) 1059 WP_409174271.1 recombinase RecA Machinery gene
  ACKKE8_RS17990 (ACKKE8_17990) - 3657468..3659057 (-) 1590 WP_409174272.1 DEAD/DEAH box helicase -
  ACKKE8_RS17995 (ACKKE8_17995) cinA 3659066..3660310 (-) 1245 WP_409174273.1 competence/damage-inducible protein A Machinery gene
  ACKKE8_RS18000 (ACKKE8_18000) pgsA 3660418..3660993 (-) 576 WP_048033396.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37907.16 Da        Isoelectric Point: 4.9005

>NTDB_id=1079805 ACKKE8_RS17985 WP_409174271.1 3656241..3657299(-) (recA) [Brevibacillus fortis strain LJQJ21]
MSDRRAALESALRQIEKQFGKGSIMKLGEVSNIQISTVSSGALALDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQGRENSKVFLKENPHIASQIETK
VREYFSLNPGSVPEIEPVNDPEQDEEPTFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1079805 ACKKE8_RS17985 WP_409174271.1 3656241..3657299(-) (recA) [Brevibacillus fortis strain LJQJ21]
TTGTCAGATCGTCGCGCAGCTTTGGAGAGTGCATTGCGTCAAATAGAAAAGCAATTCGGTAAAGGTTCCATTATGAAGTT
GGGGGAAGTATCCAACATTCAGATTTCTACTGTATCGAGCGGAGCGCTTGCTCTTGATATCGCACTTGGTGTGGGCGGAT
TCCCACGCGGACGGATTGTTGAGATTTACGGACCAGAGTCTTCTGGTAAAACAACAGTAGCCCTTCATGCGATCGCAGAA
GTACAAAGACAGGGCGGACAGGCTGCGTTTATCGATGCTGAGCATGCTTTGGATCCGGTTTACGCTGCGAAGCTGGGTGT
AAACATCGACGAATTGCTGTTGTCCCAACCAGACACTGGTGAGCAAGCTCTGGAAATCGCGGAAGCACTGGTGCGCTCTG
GTGCGGTAGACATTATCGTAGTCGACTCCGTTGCGGCACTCGTGCCAAAAGCAGAGATCGAGGGCGAGATGGGAGACTCC
CACGTAGGTTTGCAAGCACGCTTGATGTCCCAAGCACTCCGCAAGCTGTCTGGTGCCATCAACAAGTCCAAAACGATTGC
GATCTTCATCAACCAGCTTCGTGAAAAAGTGGGAGTTATGTTCGGTAACCCGGAAACAACTCCAGGTGGACGCGCTTTGA
AGTTCTACGCGAGTGTTCGTTTGGATGTTCGTAAAGCGGAATCTATCAAAGTCGGCAACGATATTTTGGGAAGCAAGACG
AAAATCAAAGTCGTCAAAAATAAAGTGGCTCCACCATTTAAGGTTGCAGAAGTGGACATCATGTACGGTGAAGGTATTTC
CAGAGAAGGTAGCATTCTCGACATCGGTTCTGAGATTGATGTGGTTCAAAAGAGTGGGGCGTGGTATTCCTTCAATGAAG
AGCGCCTCGGCCAAGGTAGAGAAAATTCGAAGGTCTTCCTGAAGGAGAATCCGCACATTGCATCTCAGATTGAAACAAAA
GTGCGCGAATACTTCAGTCTGAATCCTGGTTCTGTACCAGAAATTGAGCCGGTAAATGACCCAGAGCAAGATGAAGAGCC
TACATTTGATCTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.627

94.318

0.77
  recA Latilactobacillus sakei subsp. sakei 23K

71.053

97.159

0.69
  recA Streptococcus mitis SK321

65.289

100

0.673
  recA Streptococcus mitis NCTC 12261

66.289

100

0.665
  recA Streptococcus pneumoniae Rx1

66.571

99.432

0.662
  recA Streptococcus pneumoniae TIGR4

66.571

99.432

0.662
  recA Streptococcus pneumoniae D39

66.571

99.432

0.662
  recA Streptococcus pneumoniae R6

66.571

99.432

0.662
  recA Streptococcus mutans UA159

65.537

100

0.659
  recA Streptococcus pyogenes NZ131

70.031

92.898

0.651
  recA Lactococcus lactis subsp. cremoris KW2

68.788

93.75

0.645
  recA Ralstonia pseudosolanacearum GMI1000

66.667

92.898

0.619
  recA Vibrio cholerae strain A1552

63.372

97.727

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.372

97.727

0.619
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae strain FA1090

62.717

98.295

0.616
  recA Glaesserella parasuis strain SC1401

64.438

93.466

0.602
  recA Acinetobacter baumannii D1279779

60.286

99.432

0.599
  recA Pseudomonas stutzeri DSM 10701

60.641

97.443

0.591
  recA Acinetobacter baylyi ADP1

62.883

92.614

0.582
  recA Helicobacter pylori 26695

58.12

99.716

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

92.898

0.58
  recA Helicobacter pylori strain NCTC11637

57.835

99.716

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

91.193

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

90.909

0.565

Multiple sequence alignment