Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACKKE8_RS17995 Genome accession   NZ_CP176370
Coordinates   3659066..3660310 (-) Length   414 a.a.
NCBI ID   WP_409174273.1    Uniprot ID   -
Organism   Brevibacillus fortis strain LJQJ21     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3654066..3665310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKKE8_RS17980 (ACKKE8_17980) - 3655530..3656171 (-) 642 WP_409174270.1 RecX family transcriptional regulator -
  ACKKE8_RS17985 (ACKKE8_17985) recA 3656241..3657299 (-) 1059 WP_409174271.1 recombinase RecA Machinery gene
  ACKKE8_RS17990 (ACKKE8_17990) - 3657468..3659057 (-) 1590 WP_409174272.1 DEAD/DEAH box helicase -
  ACKKE8_RS17995 (ACKKE8_17995) cinA 3659066..3660310 (-) 1245 WP_409174273.1 competence/damage-inducible protein A Machinery gene
  ACKKE8_RS18000 (ACKKE8_18000) pgsA 3660418..3660993 (-) 576 WP_048033396.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACKKE8_RS18005 (ACKKE8_18005) rimO 3660994..3662340 (-) 1347 WP_409174274.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACKKE8_RS18010 (ACKKE8_18010) - 3662453..3663349 (-) 897 WP_409174275.1 RodZ domain-containing protein -
  ACKKE8_RS18015 (ACKKE8_18015) - 3663362..3664141 (-) 780 WP_016743377.1 YmfK family protein -
  ACKKE8_RS18020 (ACKKE8_18020) - 3664250..3664519 (-) 270 WP_409174276.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44865.37 Da        Isoelectric Point: 5.0809

>NTDB_id=1079806 ACKKE8_RS17995 WP_409174273.1 3659066..3660310(-) (cinA) [Brevibacillus fortis strain LJQJ21]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLLQVIRLASGRSDLVIFTGGLGPTQDDLTKET
LAGHVGIGLETNPEAMERIEKFFSQRGIVMTENNRKQALVLSGSHVFSNDFGMAPGMAIRHDSSTFVLLPGPPSELYPMV
ENYVMPYLTDLLPEKQVFHSHVLRFYGIGESALEEKLLDLIEKQDNPTIAPYAKEFEVTLRITARAATVEEGEALILPVE
TEILSRVGQYMYGMGENSSLHDVLVSELKKRNETIACAESCTGGAIASLITSVPGSSQVFRGGVVCYTNEVKNQLLEVPD
TILQTDGAVSEKTAQLLAEHVREKLGATYGISVTGVAGPDPSEGKPVGLVYVGSAAEGMPTVVKELRLAGRRHAIVGRAA
KYALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1079806 ACKKE8_RS17995 WP_409174273.1 3659066..3660310(-) (cinA) [Brevibacillus fortis strain LJQJ21]
ATGAGAGCGGAGATTATCGCGGTAGGTACCGAGCTTTTGTTAGGCCAGATCGCTAACACCAACGCACAGTTTCTTTCTCA
GAAGCTGGCGGAAATTGGCGTGGGAGTTTACTTTCATACGGTTGTAGGAGACAACACGGAGCGATTGCTACAAGTGATTC
GATTGGCATCAGGGCGATCTGATCTCGTCATTTTCACGGGTGGGCTAGGGCCGACTCAAGATGATTTGACGAAAGAAACC
TTGGCGGGGCATGTAGGCATTGGATTGGAAACGAATCCAGAGGCCATGGAGAGAATTGAAAAATTCTTTTCGCAACGTGG
GATTGTCATGACGGAGAACAATCGTAAGCAGGCGCTGGTGCTTTCTGGAAGCCATGTATTCTCCAATGATTTCGGGATGG
CGCCGGGGATGGCGATCCGTCATGACAGTAGTACGTTCGTGCTGTTGCCTGGACCACCAAGCGAGCTGTATCCAATGGTG
GAGAATTACGTGATGCCTTACTTGACCGATTTGCTCCCCGAAAAACAAGTGTTTCATTCTCATGTACTCCGGTTCTACGG
AATAGGTGAATCCGCTTTGGAGGAAAAACTGCTCGATCTGATCGAAAAGCAGGACAATCCAACGATCGCGCCATACGCCA
AAGAATTCGAAGTAACGCTGCGGATTACGGCAAGAGCTGCTACAGTCGAAGAAGGGGAAGCCTTGATTTTGCCTGTAGAA
ACAGAAATTCTCAGCCGTGTTGGCCAGTATATGTACGGGATGGGCGAGAACTCGTCGCTGCATGATGTGCTGGTTTCTGA
GCTAAAAAAGAGAAATGAGACGATTGCTTGTGCAGAAAGCTGCACAGGAGGAGCAATTGCCTCGTTGATTACCTCTGTGC
CGGGAAGCTCACAAGTGTTTCGGGGCGGGGTAGTCTGCTACACCAATGAAGTGAAAAATCAGCTGCTCGAAGTACCTGAT
ACCATTTTGCAAACAGATGGGGCAGTCAGTGAGAAAACGGCTCAATTGCTGGCTGAACATGTACGAGAAAAGCTGGGAGC
TACTTACGGGATCTCTGTTACGGGAGTGGCTGGACCCGATCCTTCCGAGGGCAAGCCTGTTGGCCTTGTTTACGTAGGGA
GCGCGGCAGAAGGAATGCCCACAGTTGTAAAAGAGCTGCGCCTTGCCGGAAGAAGGCATGCAATCGTTGGGCGTGCCGCT
AAATACGCGTTGTTTTATGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.574

99.758

0.514
  cinA Streptococcus mitis SK321

49.01

97.585

0.478
  cinA Streptococcus mitis NCTC 12261

48.762

97.585

0.476
  cinA Streptococcus pneumoniae TIGR4

48.515

97.585

0.473
  cinA Streptococcus pneumoniae Rx1

48.267

97.585

0.471
  cinA Streptococcus pneumoniae R6

48.267

97.585

0.471
  cinA Streptococcus pneumoniae D39

48.02

97.585

0.469
  cinA Streptococcus mutans UA159

45.865

96.377

0.442
  cinA Streptococcus suis isolate S10

41.013

95.411

0.391

Multiple sequence alignment