Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACJYYY_RS06565 Genome accession   NZ_CP175511
Coordinates   1338338..1339384 (-) Length   348 a.a.
NCBI ID   WP_035315284.1    Uniprot ID   W7CJ72
Organism   Brochothrix campestris strain DSM 4712     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1333338..1344384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJYYY_RS06550 (ACJYYY_06550) - 1334933..1335592 (+) 660 WP_408868738.1 transposase family protein -
  ACJYYY_RS06555 (ACJYYY_06555) - 1335510..1336114 (+) 605 Protein_1265 transposase -
  ACJYYY_RS06560 (ACJYYY_06560) rny 1336402..1337964 (-) 1563 WP_035315285.1 ribonuclease Y -
  ACJYYY_RS06565 (ACJYYY_06565) recA 1338338..1339384 (-) 1047 WP_035315284.1 recombinase RecA Machinery gene
  ACJYYY_RS06570 (ACJYYY_06570) cinA 1339545..1340771 (-) 1227 WP_408868739.1 competence/damage-inducible protein A Machinery gene
  ACJYYY_RS06575 (ACJYYY_06575) pgsA 1340916..1341497 (-) 582 WP_035315282.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACJYYY_RS06580 (ACJYYY_06580) - 1341609..1342400 (-) 792 Protein_1270 RodZ domain-containing protein -
  ACJYYY_RS06585 (ACJYYY_06585) - 1342849..1344090 (-) 1242 WP_035315277.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37687.77 Da        Isoelectric Point: 5.0104

>NTDB_id=1077889 ACJYYY_RS06565 WP_035315284.1 1338338..1339384(-) (recA) [Brochothrix campestris strain DSM 4712]
MDNRQAALDQALKQIEKQFGKGSIMKLGEKTDTNIKTIPSGSLALDVALGVGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQEKGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTGEQALEICEALVRSGAIDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGSINKSKTIALFINQIREKVGVMFGNPEITPGGRALKFYASVRLEVRRAEQLKQGTDIIGNKT
RIKVVKNKVAPPFRIAEVDIVYGQGISREGEIVDMAAEHDIIVKSGSWYSYEGERIGQGRENAKQYLREHTEDRLAIYEK
VRDAYGIGAELPEAATGKDETDATEDDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1077889 ACJYYY_RS06565 WP_035315284.1 1338338..1339384(-) (recA) [Brochothrix campestris strain DSM 4712]
TTGGATAATCGTCAAGCGGCCTTAGATCAGGCATTGAAACAAATTGAAAAACAATTTGGTAAAGGTTCTATTATGAAATT
AGGTGAAAAAACTGATACAAATATAAAAACAATTCCAAGTGGTTCGTTAGCACTTGATGTGGCATTAGGTGTTGGTGGTT
ACCCACGTGGCCGTGTCATTGAAGTATATGGTCCAGAAAGTTCTGGTAAAACAACGGTTGCTCTCCATGCCATTGCAGAA
GTACAAGAAAAAGGTGGTACAGCTGCTTTTATCGATGCAGAGCATGCCCTTGATCCAGCTTATGCAAAAAAACTAGGTGT
GAACATTGATGAATTACTGTTATCTCAACCTGATACGGGTGAGCAAGCGCTCGAAATTTGTGAGGCACTTGTTCGTTCAG
GTGCAATTGACATCGTTGTTATCGATTCCGTGGCAGCCTTAGTGCCTAAAGCAGAAATCGAAGGCGAGATGGGTGATTCG
CACGTTGGTTTACAAGCGCGATTAATGTCTCAAGCCCTTCGTAAATTATCTGGTTCAATCAATAAATCAAAAACAATTGC
TTTATTCATCAACCAAATTCGTGAAAAAGTCGGTGTTATGTTTGGTAACCCTGAAATTACACCCGGTGGACGTGCTCTTA
AATTCTACGCATCTGTTCGTTTAGAAGTACGTCGTGCAGAGCAATTAAAACAAGGCACTGACATCATCGGTAATAAGACG
CGTATTAAAGTTGTCAAAAACAAGGTCGCTCCGCCATTCCGTATTGCCGAAGTTGACATCGTCTACGGACAAGGAATCTC
ACGCGAAGGTGAAATCGTTGATATGGCCGCTGAACACGATATTATTGTTAAAAGTGGTTCGTGGTACTCATATGAAGGCG
AACGTATTGGTCAAGGTCGTGAAAATGCGAAGCAATATTTACGTGAACATACTGAAGATCGTTTAGCGATTTATGAAAAA
GTGCGTGATGCATATGGTATCGGTGCTGAGTTGCCAGAAGCTGCGACAGGTAAAGATGAGACCGACGCAACGGAAGATGA
CGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W7CJ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.486

93.966

0.784
  recA Latilactobacillus sakei subsp. sakei 23K

75.504

99.713

0.753
  recA Streptococcus pneumoniae D39

66.962

97.414

0.652
  recA Streptococcus pneumoniae Rx1

66.962

97.414

0.652
  recA Streptococcus pneumoniae R6

66.962

97.414

0.652
  recA Streptococcus pneumoniae TIGR4

66.962

97.414

0.652
  recA Streptococcus mitis NCTC 12261

66.181

98.563

0.652
  recA Streptococcus pyogenes NZ131

68.693

94.54

0.649
  recA Streptococcus mitis SK321

65.789

98.276

0.647
  recA Streptococcus mutans UA159

67.576

94.828

0.641
  recA Lactococcus lactis subsp. cremoris KW2

66.463

94.253

0.626
  recA Neisseria gonorrhoeae MS11

61.782

100

0.618
  recA Neisseria gonorrhoeae MS11

61.782

100

0.618
  recA Neisseria gonorrhoeae strain FA1090

61.782

100

0.618
  recA Acinetobacter baylyi ADP1

60

99.138

0.595
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.943

0.592
  recA Vibrio cholerae strain A1552

63.975

92.529

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.975

92.529

0.592
  recA Glaesserella parasuis strain SC1401

58.79

99.713

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.112

92.529

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

94.253

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.856

93.966

0.572
  recA Acinetobacter baumannii D1279779

61.491

92.529

0.569
  recA Helicobacter pylori strain NCTC11637

59.819

95.115

0.569
  recA Helicobacter pylori 26695

59.819

95.115

0.569
  recA Pseudomonas stutzeri DSM 10701

61.682

92.241

0.569

Multiple sequence alignment