Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACJYYY_RS06570 Genome accession   NZ_CP175511
Coordinates   1339545..1340771 (-) Length   408 a.a.
NCBI ID   WP_408868739.1    Uniprot ID   -
Organism   Brochothrix campestris strain DSM 4712     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1334545..1345771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJYYY_RS06550 (ACJYYY_06550) - 1334933..1335592 (+) 660 WP_408868738.1 transposase family protein -
  ACJYYY_RS06555 (ACJYYY_06555) - 1335510..1336114 (+) 605 Protein_1265 transposase -
  ACJYYY_RS06560 (ACJYYY_06560) rny 1336402..1337964 (-) 1563 WP_035315285.1 ribonuclease Y -
  ACJYYY_RS06565 (ACJYYY_06565) recA 1338338..1339384 (-) 1047 WP_035315284.1 recombinase RecA Machinery gene
  ACJYYY_RS06570 (ACJYYY_06570) cinA 1339545..1340771 (-) 1227 WP_408868739.1 competence/damage-inducible protein A Machinery gene
  ACJYYY_RS06575 (ACJYYY_06575) pgsA 1340916..1341497 (-) 582 WP_035315282.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACJYYY_RS06580 (ACJYYY_06580) - 1341609..1342400 (-) 792 Protein_1270 RodZ domain-containing protein -
  ACJYYY_RS06585 (ACJYYY_06585) - 1342849..1344090 (-) 1242 WP_035315277.1 pitrilysin family protein -
  ACJYYY_RS06590 (ACJYYY_06590) - 1344092..1345348 (-) 1257 WP_035315276.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44115.38 Da        Isoelectric Point: 7.5098

>NTDB_id=1077890 ACJYYY_RS06570 WP_408868739.1 1339545..1340771(-) (cinA) [Brochothrix campestris strain DSM 4712]
MNAEVIAIGTELLLGQIVNTNAQFIAQKLADAGHNLYYQTVVGDNDKRLTAVFKQAQQRADLIIVTGGLGPTQDDITKET
LARLLQRSLVKDTVALAKIQQHFEGRQQAMTSNNLRQADVLEGATSLANKTGFAPGMLIVDKGITYVLMPGVPREMKPMF
EHVIAEYLTRNATQPITSRVLRFYGIGESRLADVLNTLITNQTNPTLATYAGTYEVSLRISAVANPLKTAAVLLDEMEAE
VQALVGNFFYGYGETGLEARVIEQLKQKQLTLSAAESLTAGLFQATIANHAGVSTIFKGGMVTYATSLKTDLLGVDAALI
AREGVVSKGCAQAMAEQIRLRTQADIGVSFTGVAGPGGQDGHPAGTVWLAISTKTETTAHLYHFNGDRQSNRERAVKQAF
WLLNQRFS

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1077890 ACJYYY_RS06570 WP_408868739.1 1339545..1340771(-) (cinA) [Brochothrix campestris strain DSM 4712]
ATGAACGCAGAAGTAATTGCAATCGGTACCGAACTTTTATTAGGACAAATTGTTAACACGAACGCGCAGTTTATTGCTCA
GAAATTAGCCGATGCGGGGCATAATCTCTATTACCAAACAGTGGTAGGAGATAACGATAAACGTTTAACAGCTGTCTTTA
AGCAAGCGCAACAACGCGCCGACTTAATTATCGTTACTGGTGGATTGGGACCGACACAAGATGATATCACGAAAGAGACG
TTAGCCCGCCTGTTACAGCGCTCTTTAGTTAAAGATACGGTTGCTCTTGCAAAAATACAACAACATTTTGAAGGGCGTCA
ACAAGCGATGACGTCCAATAATTTACGACAAGCAGATGTGCTTGAAGGTGCAACTAGCTTAGCTAATAAAACCGGATTTG
CGCCCGGTATGCTAATTGTTGACAAAGGAATTACCTATGTGTTAATGCCGGGTGTGCCACGCGAAATGAAACCGATGTTC
GAGCATGTTATCGCAGAGTATCTAACACGTAATGCAACTCAACCAATTACATCACGGGTCTTGCGTTTTTACGGAATTGG
TGAATCGCGGTTAGCAGACGTGTTAAATACATTAATTACGAACCAGACGAATCCGACACTGGCAACCTATGCTGGTACGT
ATGAGGTCAGTCTACGCATTAGTGCAGTCGCCAATCCATTGAAAACAGCTGCTGTCTTACTCGATGAAATGGAAGCAGAG
GTGCAAGCGCTAGTCGGCAACTTCTTTTATGGCTATGGCGAAACAGGTCTGGAAGCGCGTGTTATCGAGCAATTAAAACA
GAAGCAACTGACGCTATCGGCTGCTGAAAGTTTAACGGCAGGCTTGTTTCAAGCGACCATTGCTAATCATGCAGGTGTCT
CTACTATTTTTAAAGGGGGGATGGTCACCTATGCAACATCCTTGAAAACCGACTTATTAGGGGTGGATGCAGCATTGATT
GCGCGTGAGGGTGTCGTTAGCAAAGGGTGTGCGCAAGCAATGGCAGAGCAAATCCGTCTTCGCACCCAGGCGGATATCGG
TGTTAGTTTCACCGGTGTCGCTGGTCCAGGTGGCCAAGATGGACACCCAGCTGGAACGGTTTGGCTTGCTATTAGTACAA
AAACAGAGACGACTGCTCATTTATATCACTTCAATGGCGACCGCCAGTCTAATCGTGAGCGGGCTGTAAAACAAGCCTTT
TGGCTCTTGAATCAGCGTTTCTCTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(256-405)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-251)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

49.038

100

0.5
  cinA Streptococcus pneumoniae R6

48.558

100

0.495
  cinA Streptococcus mitis SK321

48.558

100

0.495
  cinA Streptococcus pneumoniae Rx1

48.558

100

0.495
  cinA Streptococcus pneumoniae D39

48.317

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.077

100

0.49
  cinA Streptococcus mutans UA159

47.317

100

0.475
  cinA Bacillus subtilis subsp. subtilis str. 168

46.04

99.02

0.456
  cinA Streptococcus suis isolate S10

37.531

99.265

0.373

Multiple sequence alignment